Publications

Book Chapters

  1. Bayesian stochastic blockmodeling
    Tiago P. Peixoto
    Chapter in “Advances in Network Clustering and Blockmodeling,” edited by P. Doreian, V. Batagelj, A. Ferligoj (Wiley, 2019)
    DOI: 10.1002/9781119483298.ch11 1705.10225

    Code is available. See the HOWTO.
  2. Modelling Temporal Networks with Markov Chains, Community Structures and Change Points
    Tiago P. Peixoto, Martin Rosvall
    Chapter in “Temporal Network Theory,” edited by Holme P., Saramäki J. (Springer, 2019)
    DOI: 10.1007/978-3-030-23495-9_4

Pre-prints

  1. Disentangling homophily, community structure and triadic closure in networks
    Tiago P. Peixoto
    2101.02510

    Code is available. See the HOWTO.

Journal Papers

  1. The physics of higher-order interactions in complex systems
    Federico Battiston, Enrico Amico, Alain Barrat, Ginestra Bianconi, Guilherme Ferraz de Arruda, Benedetta Franceschiello, Iacopo Iacopini, Sonia Kéfi, Vito Latora, Yamir Moreno, Micah M. Murray, Tiago P. Peixoto, Francesco Vaccarino, and Giovanni Petri
    Nature Physics 17, 1093–1098 (2021)
    DOI: 10.1038/s41567-021-01371-4 2110.06023

  2. Revealing consensus and dissensus between network partitions
    Tiago P. Peixoto
    Phys. Rev. X 11 021003 (2021)
    DOI: 10.1103/PhysRevX.11.021003 2005.13977

    Code is available. See the HOWTO.
  3. Hypergraph reconstruction from network data
    Jean-Gabriel Young, Giovanni Petri, Tiago P. Peixoto
    Commun Phys 4, 135 (2021)
    DOI: 10.1038/s42005-021-00637-w 2008.04948

    Code is available. See the documentation.
  4. Multilayer networks for text analysis with multiple data types
    Charles C. Hyland, Yuanming Tao, Lamiae Azizi, Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    EPJ Data Science volume 10, 33 (2021)
    DOI: 10.1140/epjds/s13688-021-00288-5 2106.15821

    Code is available. See the HOWTO.
  5. Statistical inference of assortative community structures
    Lizhi Zhang, Tiago P. Peixoto
    Phys. Rev. Research 2 043271 (2020)
    DOI: 10.1103/PhysRevResearch.2.043271 2006.14493

    Code is available. See the HOWTO.
  6. Merge-split Markov chain Monte Carlo for community detection
    Tiago P. Peixoto
    Phys. Rev. E 102 012305 (2020)
    DOI: 10.1103/PhysRevE.102.012305 2003.07070

    Code is available. See the HOWTO.
  7. Latent Poisson models for networks with heterogeneous density
    Tiago P. Peixoto
    Phys. Rev. E 102 012309 (2020)
    DOI: 10.1103/PhysRevE.102.012309 2002.07803

    Code is available. See the HOWTO.
  8. Null models for multi-optimized large-scale network structures
    Sebastian Morel-Balbi, Tiago P. Peixoto
    Phys. Rev. E 102 032306 (2020)
    DOI: 10.1103/PhysRevE.102.032306 2006.08508

  9. Network reconstruction and community detection from dynamics
    Tiago P. Peixoto
    Phys. Rev. Lett. 123 128301 (2019)
    DOI: 10.1103/PhysRevLett.123.128301 1903.10833

    Code is available. See the HOWTO.
  10. Reconstructing networks with unknown and heterogeneous errors
    Tiago P. Peixoto
    Phys. Rev. X 8 041011 (2018)
    DOI: 10.1103/PhysRevX.8.041011 1806.07956

    Code is available. See the HOWTO.
  11. A network approach to topic models
    Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    Science Advances 4 eaaq1360 (2018)
    DOI: 10.1126/sciadv.aaq1360 1708.01677

    Code is available. See also the network inference HOWTO.
  12. Nonparametric weighted stochastic block models
    Tiago P. Peixoto
    Phys. Rev. E 97 012306 (2018)
    DOI: 10.1103/PhysRevE.97.012306 1708.01432

    Code is available. See the HOWTO.
  13. Change points, memory and epidemic spreading in temporal networks
    Tiago P. Peixoto, Laetitia Gauvin
    Sci. Rep. 8 15511 (2018)
    DOI: 10.1038/s41598-018-33313-1 1712.08948

  14. Consistencies and inconsistencies between model selection and link prediction in networks
    Toni Vallès-Català, Tiago P. Peixoto, Roger Guimerà, Marta Sales-Pardo
    Phys. Rev. E 97 062316 (2018)
    DOI: 10.1103/PhysRevE.97.062316 1705.07967

    Code is available. See the HOWTO.
  15. Modeling sequences and temporal networks with dynamic community structures
    Tiago P. Peixoto, Martin Rosvall
    Nature Communications 8, 582 (2017)
    DOI: 10.1038/s41467-017-00148-9 1509.04740

  16. Nonparametric Bayesian inference of the microcanonical stochastic block model
    Tiago P. Peixoto
    Phys. Rev. E 95 012317 (2017)
    DOI: 10.1103/PhysRevE.95.012317 1610.02703

    Code is available. See the HOWTO.
  17. Disease localization in multilayer networks
    Guilherme Ferraz de Arruda, Emanuele Cozzo, Tiago P. Peixoto, Francisco A. Rodrigues, Yamir Moreno
    Phys. Rev. X 7 1 011014 (2017)
    DOI: 10.1103/PhysRevX.7.011014 1509.07054

  18. Network structure, metadata, and the prediction of missing nodes and annotations
    Darko Hric, Tiago P. Peixoto, Santo Fortunato
    Phys. Rev. X 6 3 031038 (2016)
    DOI: 10.1103/PhysRevX.6.031038 1604.00255

  19. Generalized communities in networks
    M. E. J. Newman, Tiago P. Peixoto
    Phys. Rev. Lett. 115, 088701 (2015)
    DOI: 10.1103/PhysRevLett.115.088701 1505.07478

    Cover of the PRL issue!
  20. Sampling motif-constrained ensembles of networks
    Rico Fisher, Jorge C. Leitão, Tiago P. Peixoto, Eduardo G. Altmann
    Phys. Rev. Lett. 115, 188701 (2015)
    DOI: 10.1103/PhysRevLett.115.188701 1507.08696

  21. Inferring the mesoscale structure of layered, edge-valued and time-varying networks
    Tiago P. Peixoto
    Phys. Rev. E 92, 042807 (2015)
    DOI: 10.1103/PhysRevE.92.042807 1504.02381

    Code is available. See the HOWTO.
  22. Model selection and hypothesis testing for large-scale network models with overlapping groups
    Tiago P. Peixoto
    Phys. Rev. X 5, 011033 (2015)
    DOI: 10.1103/PhysRevX.5.011033 1409.3059

    Code is available. See the HOWTO.
  23. Maximum-entropy large-scale structures of Boolean networks optimized for criticality
    Marco Möller, Tiago P. Peixoto
    New J. Phys. 17 043021 (2015)
    DOI: 10.1088/1367-2630/17/4/043021

  24. Limits and Trade-Offs of Topological Network Robustness
    Christopher Priester, Sebastian Schmitt, Tiago P. Peixoto
    PLoS ONE 9(9): e108215 (2014)
    DOI: 10.1371/journal.pone.0108215

  25. Hierarchical block structures and high-resolution model selection in large networks
    Tiago P. Peixoto
    Phys. Rev. X 4, 011047 (2014)
    DOI: 10.1103/PhysRevX.4.011047 1310.4377

    Code is available. See the HOWTO.
  26. Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models
    Tiago P. Peixoto
    Phys. Rev. E 89, 012804 (2014)
    DOI: 10.1103/PhysRevE.89.012804 1310.4378

    Code is available. See the HOWTO.
  27. Eigenvalue Spectra of Modular Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 111 9 098701 (2013)
    DOI: 10.1103/PhysRevLett.111.098701 1306.2507

  28. Spontaneous centralization of control in a network of company ownerships
    Sebastian M. Krause, Tiago P. Peixoto, Stefan Bornholdt
    PLoS ONE 8(12): e80303 (2013)
    DOI: 10.1371/journal.pone.0080303 1306.3422

  29. Parsimonious Module Inference in Large Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 110 148701 (2013)
    DOI: 10.1103/PhysRevLett.110.148701 1212.4794

    Code is available. See the HOWTO.
  30. Evolution of Robust Network Topologies: Emergence of Central Backbones
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 109 11 118703 (2012)
    DOI: 10.1103/PhysRevLett.109.118703 1205.2909

    Coverage: Synopsis in Physics
  31. Entropy of stochastic blockmodel ensembles
    Tiago P. Peixoto
    Phys. Rev. E 85 5 056122 (2012)
    DOI: 10.1103/PhysRevE.85.056122 1112.6028

  32. No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 108 21 218702 (2012)
    DOI: 10.1103/PhysRevLett.108.218702 1201.3798

    Coverage: (Phys.org) High gas prices may be explained by self-organized cartel behavior, (Physics arXiv Blog) Cartels Are an Emergent Phenomenon, Say Complexity Theorists, (Jura Forum) Bremer Uni-Studie: Flächendeckend höhere Benzinpreise deuten nicht gleich auf Preisabsprachen hin, (kreiszeitung.de) Benzinpreis: Kein Hinweis auf Absprache
  33. Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks
    Tiago P. Peixoto
    Phys. Rev. E 85 4 041908 (2012)
    DOI: 10.1103/PhysRevE.85.041908 1108.4341

  34. Reliable dynamics in Boolean and continuous networks
    Eva Ackermann, Tiago P. Peixoto, Barbara Drossel
    New J. Phys. 14 12 123029 (2012)
    DOI: 10.1088/1367-2630/14/12/123029

  35. The behavior of noise-resilient Boolean networks with diverse topologies
    Tiago P Peixoto
    J. Stat. Mech. 2012 01 P01006 (2012)
    DOI: 10.1088/1742-5468/2012/01/P01006 1108.4329

  36. Trust Transitivity in Social Networks
    Oliver Richters, Tiago P. Peixoto
    PLOS ONE 6 4 e18384 (2011)
    DOI: 10.1371/journal.pone.0018384 1012.1358

  37. Density profile and polymer configurations for a polymer melt in a regular array of nanotubes
    Tiago P Peixoto, Barbara Drossel
    New J. Phys. 13 7 073030 (2011)
    DOI: 10.1088/1367-2630/13/7/073030

  38. The phase diagram of random Boolean networks with nested canalizing functions
    T. P. Peixoto
    Eur. Phys. J. B 78 2 187--192 (2010)
    DOI: 10.1140/epjb/e2010-10559-0 1007.3411

  39. Boolean networks with robust and reliable trajectories
    Christoph Schmal, Tiago P Peixoto, Barbara Drossel
    New J. Phys. 12 11 113054 (2010)
    DOI: 10.1088/1367-2630/12/11/113054 1008.1726

  40. Redundancy and Error Resilience in Boolean Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 104 4 048701 (2010)
    DOI: 10.1103/PhysRevLett.104.048701 0909.1740

  41. Spatiotemporal correlations of aftershock sequences
    Tiago P. Peixoto, Katharina Doblhoff-Dier, Jörn Davidsen
    J. Geophys. Res. 115 B10309 (2010)
    DOI: 201010.1029/2010JB007626

  42. Polymer confinement effects in aligned carbon nanotubes arrays
    Pitamber Mahanandia, Jörg J. Schneider, Marina Khaneft, Bernd Stühn, Tiago P. Peixoto, Barbara Drossel
    Phys. Chem. Chem. Phys. 12 17 4407 (2010)
    DOI: 10.1039/b922906j

  43. Boolean networks with reliable dynamics
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 80 5 056102 (2009)
    DOI: 10.1103/PhysRevE.80.056102 0905.0925

  44. Noise in random Boolean networks
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 79 3 036108 (2009)
    DOI: 10.1103/PhysRevE.79.036108 0808.3087

  45. Network of recurrent events for the Olami-Feder-Christensen model
    Tiago P. Peixoto, Jörn Davidsen
    Phys. Rev. E 77 6 066107 (2008)
    DOI: 10.1103/PhysRevE.77.066107 0803.1404

  46. Network of epicenters of the Olami-Feder-Christensen model of earthquakes
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 74 1 016126 (2006)
    DOI: 10.1103/PhysRevE.74.016126 cond-mat/0602244

  47. Statistics of epicenters in the Olami-Feder-Christensen model in two and three dimensions
    Tiago P. Peixoto, Carmen P. C. Prado
    Physica A 342 1-2 171--177 (2004)
    DOI: 10.1016/j.physa.2004.04.075

  48. Distribution of epicenters in the Olami-Feder-Christensen model
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 69 2 025101 (2004)
    DOI: 10.1103/PhysRevE.69.025101 cond-mat/0310366