Monographs and book chapters
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Descriptive vs. inferential community detection in networks: pitfalls, myths, and half-truths ¶
Tiago P. Peixoto
Elements in the Structure and Dynamics of Complex Networks, Cambridge University Press (2023)
DOI: 10.1017/9781009118897 2112.00183
Code is available. See the HOWTO.
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Modelling Temporal Networks with Markov Chains, Community Structures and Change Points ¶
Tiago P. Peixoto, Martin Rosvall
Chapter in “Temporal Network Theory,” edited by Holme P., Saramäki J. (Springer, 2023)
DOI: 10.1007/978-3-031-30399-9_4
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Bayesian stochastic blockmodeling ¶
Tiago P. Peixoto
Chapter in “Advances in Network Clustering and Blockmodeling,” edited by P. Doreian, V. Batagelj, A. Ferligoj (Wiley, 2019)
DOI: 10.1002/9781119483298.ch11 1705.10225
Code is available. See the HOWTO.
Journal Papers
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Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection ¶
Tiago P. Peixoto, Alec Kirkley
Phys. Rev. E 108, 024309 (2023)
DOI: 10.1103/PhysRevE.108.024309 2210.09186
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Statistical inference links data and theory in network science ¶
Leto Peel, Tiago P. Peixoto, Manlio De Domenico
Nature Communications 13, 6794 (2022)
DOI: 10.1038/s41467-022-34267-9
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Ordered community detection in directed networks ¶
Tiago P. Peixoto
Phys. Rev. E 106, 024305 (2022)
DOI: 10.1103/PhysRevE.106.024305 2203.16460
Code is available. See the HOWTO.
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Disentangling homophily, community structure and triadic closure in networks ¶
Tiago P. Peixoto
Phys. Rev. X 12, 011004 (2022)
DOI: 10.1103/PhysRevX.12.011004 2101.02510
Code is available. See the HOWTO.
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Systematic assessment of the quality of fit of the stochastic block model for empirical networks ¶
Felipe Vaca-Ramírez, Tiago P. Peixoto
Phys. Rev. E 105, 054311 (2022)
DOI: 10.1103/PhysRevE.105.054311 2201.01658
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The physics of higher-order interactions in complex systems ¶
Federico Battiston, Enrico Amico, Alain Barrat, Ginestra Bianconi, Guilherme Ferraz de Arruda, Benedetta Franceschiello, Iacopo Iacopini, Sonia Kéfi, Vito Latora, Yamir Moreno, Micah M. Murray, Tiago P. Peixoto, Francesco Vaccarino, and Giovanni Petri
Nature Physics 17, 1093–1098 (2021)
DOI: 10.1038/s41567-021-01371-4 2110.06023
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Revealing consensus and dissensus between network partitions ¶
Tiago P. Peixoto
Phys. Rev. X 11 021003 (2021)
DOI: 10.1103/PhysRevX.11.021003 2005.13977
Code is available. See the HOWTO.
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Hypergraph reconstruction from network data ¶
Jean-Gabriel Young, Giovanni Petri, Tiago P. Peixoto
Commun Phys 4, 135 (2021)
DOI: 10.1038/s42005-021-00637-w 2008.04948
Code is available. See the documentation.
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Multilayer networks for text analysis with multiple data types ¶
Charles C. Hyland, Yuanming Tao, Lamiae Azizi, Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
EPJ Data Science volume 10, 33 (2021)
DOI: 10.1140/epjds/s13688-021-00288-5 2106.15821
Code is available. See the HOWTO.
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Statistical inference of assortative community structures ¶
Lizhi Zhang, Tiago P. Peixoto
Phys. Rev. Research 2 043271 (2020)
DOI: 10.1103/PhysRevResearch.2.043271 2006.14493
Code is available. See the HOWTO.
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Merge-split Markov chain Monte Carlo for community detection ¶
Tiago P. Peixoto
Phys. Rev. E 102 012305 (2020)
DOI: 10.1103/PhysRevE.102.012305 2003.07070
Code is available. See the HOWTO.
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Latent Poisson models for networks with heterogeneous density ¶
Tiago P. Peixoto
Phys. Rev. E 102 012309 (2020)
DOI: 10.1103/PhysRevE.102.012309 2002.07803
Code is available. See the HOWTO.
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Null models for multi-optimized large-scale network structures ¶
Sebastian Morel-Balbi, Tiago P. Peixoto
Phys. Rev. E 102 032306 (2020)
DOI: 10.1103/PhysRevE.102.032306 2006.08508
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Network reconstruction and community detection from dynamics ¶
Tiago P. Peixoto
Phys. Rev. Lett. 123 128301 (2019)
DOI: 10.1103/PhysRevLett.123.128301 1903.10833
Code is available. See the HOWTO.
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Reconstructing networks with unknown and heterogeneous errors ¶
Tiago P. Peixoto
Phys. Rev. X 8 041011 (2018)
DOI: 10.1103/PhysRevX.8.041011 1806.07956
Code is available. See the HOWTO.
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A network approach to topic models ¶
Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
Science Advances 4 eaaq1360 (2018)
DOI: 10.1126/sciadv.aaq1360 1708.01677
Code is available. See also the network inference HOWTO.
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Nonparametric weighted stochastic block models ¶
Tiago P. Peixoto
Phys. Rev. E 97 012306 (2018)
DOI: 10.1103/PhysRevE.97.012306 1708.01432
Code is available. See the HOWTO.
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Change points, memory and epidemic spreading in temporal networks ¶
Tiago P. Peixoto, Laetitia Gauvin
Sci. Rep. 8 15511 (2018)
DOI: 10.1038/s41598-018-33313-1 1712.08948
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Consistencies and inconsistencies between model selection and link prediction in networks ¶
Toni Vallès-Català, Tiago P. Peixoto, Roger Guimerà, Marta Sales-Pardo
Phys. Rev. E 97 062316 (2018)
DOI: 10.1103/PhysRevE.97.062316 1705.07967
Code is available. See the HOWTO.
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Modeling sequences and temporal networks with dynamic community structures ¶
Tiago P. Peixoto, Martin Rosvall
Nature Communications 8, 582 (2017)
DOI: 10.1038/s41467-017-00148-9 1509.04740
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Nonparametric Bayesian inference of the microcanonical stochastic block model ¶
Tiago P. Peixoto
Phys. Rev. E 95 012317 (2017)
DOI: 10.1103/PhysRevE.95.012317 1610.02703
Code is available. See the HOWTO.
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Disease localization in multilayer networks ¶
Guilherme Ferraz de Arruda, Emanuele Cozzo, Tiago P. Peixoto, Francisco A. Rodrigues, Yamir Moreno
Phys. Rev. X 7 1 011014 (2017)
DOI: 10.1103/PhysRevX.7.011014 1509.07054
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Network structure, metadata, and the prediction of missing nodes and annotations ¶
Darko Hric, Tiago P. Peixoto, Santo Fortunato
Phys. Rev. X 6 3 031038 (2016)
DOI: 10.1103/PhysRevX.6.031038 1604.00255
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Generalized communities in networks ¶
M. E. J. Newman, Tiago P. Peixoto
Phys. Rev. Lett. 115, 088701 (2015)
DOI: 10.1103/PhysRevLett.115.088701 1505.07478
Cover of the PRL issue!
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Sampling motif-constrained ensembles of networks ¶
Rico Fisher, Jorge C. Leitão, Tiago P. Peixoto, Eduardo G. Altmann
Phys. Rev. Lett. 115, 188701 (2015)
DOI: 10.1103/PhysRevLett.115.188701 1507.08696
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Inferring the mesoscale structure of layered, edge-valued and time-varying networks ¶
Tiago P. Peixoto
Phys. Rev. E 92, 042807 (2015)
DOI: 10.1103/PhysRevE.92.042807 1504.02381
Code is available. See the HOWTO.
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Model selection and hypothesis testing for large-scale network models with overlapping groups ¶
Tiago P. Peixoto
Phys. Rev. X 5, 011033 (2015)
DOI: 10.1103/PhysRevX.5.011033 1409.3059
Code is available. See the HOWTO.
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Maximum-entropy large-scale structures of Boolean networks optimized for criticality ¶
Marco Möller, Tiago P. Peixoto
New J. Phys. 17 043021 (2015)
DOI: 10.1088/1367-2630/17/4/043021
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Limits and Trade-Offs of Topological Network Robustness ¶
Christopher Priester, Sebastian Schmitt, Tiago P. Peixoto
PLoS ONE 9(9): e108215 (2014)
DOI: 10.1371/journal.pone.0108215
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Hierarchical block structures and high-resolution model selection in large networks ¶
Tiago P. Peixoto
Phys. Rev. X 4, 011047 (2014)
DOI: 10.1103/PhysRevX.4.011047 1310.4377
Code is available. See the HOWTO.
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Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models ¶
Tiago P. Peixoto
Phys. Rev. E 89, 012804 (2014)
DOI: 10.1103/PhysRevE.89.012804 1310.4378
Code is available. See the HOWTO.
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Eigenvalue Spectra of Modular Networks ¶
Tiago P. Peixoto
Phys. Rev. Lett. 111 9 098701 (2013)
DOI: 10.1103/PhysRevLett.111.098701 1306.2507
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Spontaneous centralization of control in a network of company ownerships ¶
Sebastian M. Krause, Tiago P. Peixoto, Stefan Bornholdt
PLoS ONE 8(12): e80303 (2013)
DOI: 10.1371/journal.pone.0080303 1306.3422
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Parsimonious Module Inference in Large Networks ¶
Tiago P. Peixoto
Phys. Rev. Lett. 110 148701 (2013)
DOI: 10.1103/PhysRevLett.110.148701 1212.4794
Code is available. See the HOWTO.
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Evolution of Robust Network Topologies: Emergence of Central Backbones ¶
Tiago P. Peixoto, Stefan Bornholdt
Phys. Rev. Lett. 109 11 118703 (2012)
DOI: 10.1103/PhysRevLett.109.118703 1205.2909
Coverage: Synopsis in Physics
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Entropy of stochastic blockmodel ensembles ¶
Tiago P. Peixoto
Phys. Rev. E 85 5 056122 (2012)
DOI: 10.1103/PhysRevE.85.056122 1112.6028
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No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game ¶
Tiago P. Peixoto, Stefan Bornholdt
Phys. Rev. Lett. 108 21 218702 (2012)
DOI: 10.1103/PhysRevLett.108.218702 1201.3798
Coverage: (Phys.org) High gas prices may be explained by self-organized cartel behavior, (Physics arXiv Blog) Cartels Are an Emergent Phenomenon, Say Complexity Theorists, (Jura Forum) Bremer Uni-Studie: Flächendeckend höhere Benzinpreise deuten nicht gleich auf Preisabsprachen hin, (kreiszeitung.de) Benzinpreis: Kein Hinweis auf Absprache
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Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks ¶
Tiago P. Peixoto
Phys. Rev. E 85 4 041908 (2012)
DOI: 10.1103/PhysRevE.85.041908 1108.4341
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Reliable dynamics in Boolean and continuous networks ¶
Eva Ackermann, Tiago P. Peixoto, Barbara Drossel
New J. Phys. 14 12 123029 (2012)
DOI: 10.1088/1367-2630/14/12/123029
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The behavior of noise-resilient Boolean networks with diverse topologies ¶
Tiago P Peixoto
J. Stat. Mech. 2012 01 P01006 (2012)
DOI: 10.1088/1742-5468/2012/01/P01006 1108.4329
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Trust Transitivity in Social Networks ¶
Oliver Richters, Tiago P. Peixoto
PLOS ONE 6 4 e18384 (2011)
DOI: 10.1371/journal.pone.0018384 1012.1358
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Density profile and polymer configurations for a polymer melt in a regular array of nanotubes ¶
Tiago P Peixoto, Barbara Drossel
New J. Phys. 13 7 073030 (2011)
DOI: 10.1088/1367-2630/13/7/073030
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The phase diagram of random Boolean networks with nested canalizing functions ¶
T. P. Peixoto
Eur. Phys. J. B 78 2 187–192 (2010)
DOI: 10.1140/epjb/e2010-10559-0 1007.3411
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Boolean networks with robust and reliable trajectories ¶
Christoph Schmal, Tiago P Peixoto, Barbara Drossel
New J. Phys. 12 11 113054 (2010)
DOI: 10.1088/1367-2630/12/11/113054 1008.1726
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Redundancy and Error Resilience in Boolean Networks ¶
Tiago P. Peixoto
Phys. Rev. Lett. 104 4 048701 (2010)
DOI: 10.1103/PhysRevLett.104.048701 0909.1740
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Spatiotemporal correlations of aftershock sequences ¶
Tiago P. Peixoto, Katharina Doblhoff-Dier, Jörn Davidsen
J. Geophys. Res. 115 B10309 (2010)
DOI: 10.1029/2010JB007626
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Polymer confinement effects in aligned carbon nanotubes arrays ¶
Pitamber Mahanandia, Jörg J. Schneider, Marina Khaneft, Bernd Stühn, Tiago P. Peixoto, Barbara Drossel
Phys. Chem. Chem. Phys. 12 17 4407 (2010)
DOI: 10.1039/b922906j
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Boolean networks with reliable dynamics ¶
Tiago P. Peixoto, Barbara Drossel
Phys. Rev. E 80 5 056102 (2009)
DOI: 10.1103/PhysRevE.80.056102 0905.0925
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Noise in random Boolean networks ¶
Tiago P. Peixoto, Barbara Drossel
Phys. Rev. E 79 3 036108 (2009)
DOI: 10.1103/PhysRevE.79.036108 0808.3087
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Network of recurrent events for the Olami-Feder-Christensen model ¶
Tiago P. Peixoto, Jörn Davidsen
Phys. Rev. E 77 6 066107 (2008)
DOI: 10.1103/PhysRevE.77.066107 0803.1404
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Network of epicenters of the Olami-Feder-Christensen model of earthquakes ¶
Tiago P. Peixoto, Carmen P. C. Prado
Phys. Rev. E 74 1 016126 (2006)
DOI: 10.1103/PhysRevE.74.016126 cond-mat/0602244
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Statistics of epicenters in the Olami-Feder-Christensen model in two and three dimensions ¶
Tiago P. Peixoto, Carmen P. C. Prado
Physica A 342 1-2 171–177 (2004)
DOI: 10.1016/j.physa.2004.04.075
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Distribution of epicenters in the Olami-Feder-Christensen model ¶
Tiago P. Peixoto, Carmen P. C. Prado
Phys. Rev. E 69 2 025101 (2004)
DOI: 10.1103/PhysRevE.69.025101 cond-mat/0310366