Publications

Monographs and book chapters

  1. Descriptive vs. inferential community detection in networks: pitfalls, myths, and half-truths
    Tiago P. Peixoto
    Elements in the Structure and Dynamics of Complex Networks, Cambridge University Press (2023)
    DOI: 10.1017/9781009118897

    Code is available. See the HOWTO.
    @book{Peixoto_2023,
    title={Descriptive vs. Inferential Community Detection in Networks: Pitfalls, Myths and Half-Truths},
    ISBN={9781009113007},
    url={http://dx.doi.org/10.1017/9781009118897},
    DOI={10.1017/9781009118897},
    publisher={Cambridge University Press},
    author={Peixoto, Tiago P.},
    year={2023},
    month=jul
}
  2. Modelling Temporal Networks with Markov Chains, Community Structures and Change Points
    Tiago P. Peixoto, Martin Rosvall
    Chapter in “Temporal Network Theory,” edited by Holme P., Saramäki J. (Springer, 2023)
    DOI: 10.1007/978-3-031-30399-9_4 

    @inbook{Peixoto_2023,
    title={Modelling Temporal Networks with Markov Chains, Community Structures and Change Points},
    ISBN={9783031303999},
    ISSN={2509-9582},
    url={http://dx.doi.org/10.1007/978-3-031-30399-9_4},
    DOI={10.1007/978-3-031-30399-9_4},
    booktitle={Temporal Network Theory},
    publisher={Springer International Publishing},
    author={Peixoto, Tiago P. and Rosvall, Martin},
    year={2023},
    pages={65–82}
}
  3. Bayesian stochastic blockmodeling
    Tiago P. Peixoto
    Chapter in “Advances in Network Clustering and Blockmodeling,” edited by P. Doreian, V. Batagelj, A. Ferligoj (Wiley, 2019)
    DOI: 10.1002/9781119483298.ch11

    Code is available. See the HOWTO.
    @misc{Peixoto_2019,
    title={Bayesian Stochastic Blockmodeling},
    ISBN={9781119483298},
    url={http://dx.doi.org/10.1002/9781119483298.ch11},
    DOI={10.1002/9781119483298.ch11},
    journal={Advances in Network Clustering and Blockmodeling},
    publisher={Wiley},
    author={Peixoto, Tiago P.},
    year={2019},
    month=nov,
    pages={289–332}
}

Pre-prints

  1. Network reconstruction via the minimum description length principle
    Tiago P. Peixoto
    2405.01015

    DOI: 10.48550/arXiv.2405.01015
    @misc{https://doi.org/10.48550/arxiv.2405.01015,
    doi = {10.48550/ARXIV.2405.01015},
    url = {https://arxiv.org/abs/2405.01015},
    author = {Peixoto, Tiago P.},
    keywords = {Machine Learning (stat.ML), Machine Learning (cs.LG), Social and Information Networks (cs.SI), Data Analysis, Statistics and Probability (physics.data-an), Populations and Evolution (q-bio.PE), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences, FOS: Biological sciences, FOS: Biological sciences},
    title = {Network reconstruction via the minimum description length principle},
    publisher = {arXiv},
    year = {2024},
    copyright = {Creative Commons Attribution Share Alike 4.0 International}
}
  2. Scalable network reconstruction in subquadratic time
    Tiago P. Peixoto
    2401.01404

    DOI: 10.48550/arXiv.2401.01404
    @misc{https://doi.org/10.48550/arxiv.2401.01404,
    doi = {10.48550/ARXIV.2401.01404},
    url = {https://arxiv.org/abs/2401.01404},
    author = {Peixoto, Tiago P.},
    keywords = {Data Structures and Algorithms (cs.DS), Machine Learning (cs.LG), Data Analysis, Statistics and Probability (physics.data-an), Computation (stat.CO), Machine Learning (stat.ML), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences},
    title = {Scalable network reconstruction in subquadratic time},
    publisher = {arXiv},
    year = {2024},
    copyright = {Creative Commons Attribution Share Alike 4.0 International}
}

Journal Papers

  1. Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection
    Tiago P. Peixoto, Alec Kirkley
    Phys. Rev. E 108, 024309 (2023)
    DOI: 10.1103/PhysRevE.108.024309 

    @article{Peixoto_2023,
    title={Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection},
    volume={108},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.108.024309},
    DOI={10.1103/physreve.108.024309},
    number={2},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Kirkley, Alec},
    year={2023},
    month=aug
}
  2. Statistical inference links data and theory in network science
    Leto Peel, Tiago P. Peixoto, Manlio De Domenico
    Nature Communications 13, 6794 (2022)
    DOI: 10.1038/s41467-022-34267-9 

    @article{Peel_2022,
    title={Statistical inference links data and theory in network science},
    volume={13},
    ISSN={2041-1723},
    url={http://dx.doi.org/10.1038/s41467-022-34267-9},
    DOI={10.1038/s41467-022-34267-9},
    number={1},
    journal={Nature Communications},
    publisher={Springer Science and Business Media LLC},
    author={Peel, Leto and Peixoto, Tiago P. and De Domenico, Manlio},
    year={2022},
    month=nov
}
  3. Ordered community detection in directed networks
    Tiago P. Peixoto
    Phys. Rev. E 106, 024305 (2022)
    DOI: 10.1103/PhysRevE.106.024305

    Code is available. See the HOWTO.
    @article{Peixoto_2022,
    title={Ordered community detection in directed networks},
    volume={106},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.106.024305},
    DOI={10.1103/physreve.106.024305},
    number={2},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2022},
    month=aug
}
  4. Disentangling homophily, community structure and triadic closure in networks
    Tiago P. Peixoto
    Phys. Rev. X 12, 011004 (2022)
    DOI: 10.1103/PhysRevX.12.011004

    Code is available. See the HOWTO.
    @article{Peixoto_2022,
    title={Disentangling Homophily, Community Structure, and Triadic Closure in Networks},
    volume={12},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.12.011004},
    DOI={10.1103/physrevx.12.011004},
    number={1},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2022},
    month=jan
}
  5. Systematic assessment of the quality of fit of the stochastic block model for empirical networks
    Felipe Vaca-Ramírez, Tiago P. Peixoto
    Phys. Rev. E 105, 054311 (2022)
    DOI: 10.1103/PhysRevE.105.054311 

    @article{Vaca_Ram_rez_2022,
    title={Systematic assessment of the quality of fit of the stochastic block model for empirical networks},
    volume={105},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.105.054311},
    DOI={10.1103/physreve.105.054311},
    number={5},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Vaca-Ramírez, Felipe and Peixoto, Tiago P.},
    year={2022},
    month=may
}
  6. The physics of higher-order interactions in complex systems
    Federico Battiston, Enrico Amico, Alain Barrat, Ginestra Bianconi, Guilherme Ferraz de Arruda, Benedetta Franceschiello, Iacopo Iacopini, Sonia Kéfi, Vito Latora, Yamir Moreno, Micah M. Murray, Tiago P. Peixoto, Francesco Vaccarino, and Giovanni Petri
    Nature Physics 17, 1093–1098 (2021)
    DOI: 10.1038/s41567-021-01371-4 

    @article{Battiston_2021,
    title={The physics of higher-order interactions in complex systems},
    volume={17},
    ISSN={1745-2481},
    url={http://dx.doi.org/10.1038/s41567-021-01371-4},
    DOI={10.1038/s41567-021-01371-4},
    number={10},
    journal={Nature Physics},
    publisher={Springer Science and Business Media LLC},
    author={Battiston, Federico and Amico, Enrico and Barrat, Alain and Bianconi, Ginestra and Ferraz de Arruda, Guilherme and Franceschiello, Benedetta and Iacopini, Iacopo and Kéfi, Sonia and Latora, Vito and Moreno, Yamir and Murray, Micah M. and Peixoto, Tiago P. and Vaccarino, Francesco and Petri, Giovanni},
    year={2021},
    month=oct,
    pages={1093–1098}
}
  7. Revealing consensus and dissensus between network partitions
    Tiago P. Peixoto
    Phys. Rev. X 11 021003 (2021)
    DOI: 10.1103/PhysRevX.11.021003

    Code is available. See the HOWTO.
    @article{Peixoto_2021,
    title={Revealing Consensus and Dissensus between Network Partitions},
    volume={11},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.11.021003},
    DOI={10.1103/physrevx.11.021003},
    number={2},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2021},
    month=apr
}
  8. Hypergraph reconstruction from network data
    Jean-Gabriel Young, Giovanni Petri, Tiago P. Peixoto
    Commun Phys 4, 135 (2021)
    DOI: 10.1038/s42005-021-00637-w

    Code is available. See the documentation.
    @article{Young_2021,
    title={Hypergraph reconstruction from network data},
    volume={4},
    ISSN={2399-3650},
    url={http://dx.doi.org/10.1038/s42005-021-00637-w},
    DOI={10.1038/s42005-021-00637-w},
    number={1},
    journal={Communications Physics},
    publisher={Springer Science and Business Media LLC},
    author={Young, Jean-Gabriel and Petri, Giovanni and Peixoto, Tiago P.},
    year={2021},
    month=jun
}
  9. Multilayer networks for text analysis with multiple data types
    Charles C. Hyland, Yuanming Tao, Lamiae Azizi, Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    EPJ Data Science volume 10, 33 (2021)
    DOI: 10.1140/epjds/s13688-021-00288-5

    Code is available. See the HOWTO.
    @article{Hyland_2021,
    title={Multilayer networks for text analysis with multiple data types},
    volume={10},
    ISSN={2193-1127},
    url={http://dx.doi.org/10.1140/epjds/s13688-021-00288-5},
    DOI={10.1140/epjds/s13688-021-00288-5},
    number={1},
    journal={EPJ Data Science},
    publisher={Springer Science and Business Media LLC},
    author={Hyland, Charles C. and Tao, Yuanming and Azizi, Lamiae and Gerlach, Martin and Peixoto, Tiago P. and Altmann, Eduardo G.},
    year={2021},
    month=jun
}
  10. Statistical inference of assortative community structures
    Lizhi Zhang, Tiago P. Peixoto
    Phys. Rev. Research 2 043271 (2020)
    DOI: 10.1103/PhysRevResearch.2.043271

    Code is available. See the HOWTO.
    @article{Zhang_2020,
    title={Statistical inference of assortative community structures},
    volume={2},
    ISSN={2643-1564},
    url={http://dx.doi.org/10.1103/PhysRevResearch.2.043271},
    DOI={10.1103/physrevresearch.2.043271},
    number={4},
    journal={Physical Review Research},
    publisher={American Physical Society (APS)},
    author={Zhang, Lizhi and Peixoto, Tiago P.},
    year={2020},
    month=nov
}
  11. Merge-split Markov chain Monte Carlo for community detection
    Tiago P. Peixoto
    Phys. Rev. E 102 012305 (2020)
    DOI: 10.1103/PhysRevE.102.012305

    Code is available. See the HOWTO.
    @article{Peixoto_2020,
    title={Merge-split Markov chain Monte Carlo for community detection},
    volume={102},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.102.012305},
    DOI={10.1103/physreve.102.012305},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2020},
    month=jul
}
  12. Latent Poisson models for networks with heterogeneous density
    Tiago P. Peixoto
    Phys. Rev. E 102 012309 (2020)
    DOI: 10.1103/PhysRevE.102.012309

    Code is available. See the HOWTO.
    @article{Peixoto_2020,
    title={Latent Poisson models for networks with heterogeneous density},
    volume={102},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.102.012309},
    DOI={10.1103/physreve.102.012309},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2020},
    month=jul
}
  13. Null models for multi-optimized large-scale network structures
    Sebastian Morel-Balbi, Tiago P. Peixoto
    Phys. Rev. E 102 032306 (2020)
    DOI: 10.1103/PhysRevE.102.032306 

    @article{Morel_Balbi_2020,
    title={Null models for multioptimized large-scale network structures},
    volume={102},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.102.032306},
    DOI={10.1103/physreve.102.032306},
    number={3},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Morel-Balbi, Sebastian and Peixoto, Tiago P.},
    year={2020},
    month=sep
}
  14. Network reconstruction and community detection from dynamics
    Tiago P. Peixoto
    Phys. Rev. Lett. 123 128301 (2019)
    DOI: 10.1103/PhysRevLett.123.128301

    Code is available. See the HOWTO.
    @article{Peixoto_2019,
    title={Network Reconstruction and Community Detection from Dynamics},
    volume={123},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.123.128301},
    DOI={10.1103/physrevlett.123.128301},
    number={12},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2019},
    month=sep
}
  15. Reconstructing networks with unknown and heterogeneous errors
    Tiago P. Peixoto
    Phys. Rev. X 8 041011 (2018)
    DOI: 10.1103/PhysRevX.8.041011

    Code is available. See the HOWTO.
    @article{Peixoto_2018,
    title={Reconstructing Networks with Unknown and Heterogeneous Errors},
    volume={8},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.8.041011},
    DOI={10.1103/physrevx.8.041011},
    number={4},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2018},
    month=oct
}
  16. A network approach to topic models
    Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    Science Advances 4 eaaq1360 (2018)
    DOI: 10.1126/sciadv.aaq1360

    Code is available. See also the network inference HOWTO.
    @article{Gerlach_2018,
    title={A network approach to topic models},
    volume={4},
    ISSN={2375-2548},
    url={http://dx.doi.org/10.1126/sciadv.aaq1360},
    DOI={10.1126/sciadv.aaq1360},
    number={7},
    journal={Science Advances},
    publisher={American Association for the Advancement of Science (AAAS)},
    author={Gerlach, Martin and Peixoto, Tiago P. and Altmann, Eduardo G.},
    year={2018},
    month=jul
}
  17. Nonparametric weighted stochastic block models
    Tiago P. Peixoto
    Phys. Rev. E 97 012306 (2018)
    DOI: 10.1103/PhysRevE.97.012306

    Code is available. See the HOWTO.
    @article{Peixoto_2018,
    title={Nonparametric weighted stochastic block models},
    volume={97},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.97.012306},
    DOI={10.1103/physreve.97.012306},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2018},
    month=jan
}
  18. Change points, memory and epidemic spreading in temporal networks
    Tiago P. Peixoto, Laetitia Gauvin
    Sci. Rep. 8 15511 (2018)
    DOI: 10.1038/s41598-018-33313-1 

    @article{P_Peixoto_2018,
    title={Change points, memory and epidemic spreading in temporal networks},
    volume={8},
    ISSN={2045-2322},
    url={http://dx.doi.org/10.1038/s41598-018-33313-1},
    DOI={10.1038/s41598-018-33313-1},
    number={1},
    journal={Scientific Reports},
    publisher={Springer Science and Business Media LLC},
    author={P. Peixoto, Tiago and Gauvin, Laetitia},
    year={2018},
    month=oct
}
  19. Consistencies and inconsistencies between model selection and link prediction in networks
    Toni Vallès-Català, Tiago P. Peixoto, Roger Guimerà, Marta Sales-Pardo
    Phys. Rev. E 97 062316 (2018)
    DOI: 10.1103/PhysRevE.97.062316

    Code is available. See the HOWTO.
    @article{Vall_s_Catal__2018,
    title={Consistencies and inconsistencies between model selection and link prediction in networks},
    volume={97},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.97.062316},
    DOI={10.1103/physreve.97.062316},
    number={6},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Vallès-Català, Toni and Peixoto, Tiago P. and Sales-Pardo, Marta and Guimerà, Roger},
    year={2018},
    month=jun
}
  20. Modeling sequences and temporal networks with dynamic community structures
    Tiago P. Peixoto, Martin Rosvall
    Nature Communications 8, 582 (2017)
    DOI: 10.1038/s41467-017-00148-9 

    @article{Peixoto_2017,
    title={Modelling sequences and temporal networks with dynamic community structures},
    volume={8},
    ISSN={2041-1723},
    url={http://dx.doi.org/10.1038/s41467-017-00148-9},
    DOI={10.1038/s41467-017-00148-9},
    number={1},
    journal={Nature Communications},
    publisher={Springer Science and Business Media LLC},
    author={Peixoto, Tiago P. and Rosvall, Martin},
    year={2017},
    month=sep
}
  21. Nonparametric Bayesian inference of the microcanonical stochastic block model
    Tiago P. Peixoto
    Phys. Rev. E 95 012317 (2017)
    DOI: 10.1103/PhysRevE.95.012317

    Code is available. See the HOWTO.
    @article{Peixoto_2017,
    title={Nonparametric Bayesian inference of the microcanonical stochastic block model},
    volume={95},
    ISSN={2470-0053},
    url={http://dx.doi.org/10.1103/PhysRevE.95.012317},
    DOI={10.1103/physreve.95.012317},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2017},
    month=jan
}
  22. Disease localization in multilayer networks
    Guilherme Ferraz de Arruda, Emanuele Cozzo, Tiago P. Peixoto, Francisco A. Rodrigues, Yamir Moreno
    Phys. Rev. X 7 1 011014 (2017)
    DOI: 10.1103/PhysRevX.7.011014 

    @article{de_Arruda_2017,
    title={Disease Localization in Multilayer Networks},
    volume={7},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.7.011014},
    DOI={10.1103/physrevx.7.011014},
    number={1},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={de Arruda, Guilherme Ferraz and Cozzo, Emanuele and Peixoto, Tiago P. and Rodrigues, Francisco A. and Moreno, Yamir},
    year={2017},
    month=feb
}
  23. Network structure, metadata, and the prediction of missing nodes and annotations
    Darko Hric, Tiago P. Peixoto, Santo Fortunato
    Phys. Rev. X 6 3 031038 (2016)
    DOI: 10.1103/PhysRevX.6.031038 

    @article{Hric_2016,
    title={Network Structure, Metadata, and the Prediction of Missing Nodes and Annotations},
    volume={6},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.6.031038},
    DOI={10.1103/physrevx.6.031038},
    number={3},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Hric, Darko and Peixoto, Tiago P. and Fortunato, Santo},
    year={2016},
    month=sep
}
  24. Generalized communities in networks
    M. E. J. Newman, Tiago P. Peixoto
    Phys. Rev. Lett. 115, 088701 (2015)
    DOI: 10.1103/PhysRevLett.115.088701

    Cover of the PRL issue!
    @article{Newman_2015,
    title={Generalized Communities in Networks},
    volume={115},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.115.088701},
    DOI={10.1103/physrevlett.115.088701},
    number={8},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Newman, M. E. J. and Peixoto, Tiago P.},
    year={2015},
    month=aug
}
  25. Sampling motif-constrained ensembles of networks
    Rico Fisher, Jorge C. Leitão, Tiago P. Peixoto, Eduardo G. Altmann
    Phys. Rev. Lett. 115, 188701 (2015)
    DOI: 10.1103/PhysRevLett.115.188701 

    @article{Fischer_2015,
    title={Sampling Motif-Constrained Ensembles of Networks},
    volume={115},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.115.188701},
    DOI={10.1103/physrevlett.115.188701},
    number={18},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Fischer, Rico and Leit√£o, Jorge C. and Peixoto, Tiago P. and Altmann, Eduardo G.},
    year={2015},
    month=oct
}
  26. Inferring the mesoscale structure of layered, edge-valued and time-varying networks
    Tiago P. Peixoto
    Phys. Rev. E 92, 042807 (2015)
    DOI: 10.1103/PhysRevE.92.042807

    Code is available. See the HOWTO.
    @article{Peixoto_2015,
    title={Inferring the mesoscale structure of layered, edge-valued, and time-varying networks},
    volume={92},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.92.042807},
    DOI={10.1103/physreve.92.042807},
    number={4},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2015},
    month=oct
}
  27. Model selection and hypothesis testing for large-scale network models with overlapping groups
    Tiago P. Peixoto
    Phys. Rev. X 5, 011033 (2015)
    DOI: 10.1103/PhysRevX.5.011033

    Code is available. See the HOWTO.
    @article{Peixoto_2015,
    title={Model Selection and Hypothesis Testing for Large-Scale Network Models with Overlapping Groups},
    volume={5},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.5.011033},
    DOI={10.1103/physrevx.5.011033},
    number={1},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2015},
    month=mar
}
  28. Maximum-entropy large-scale structures of Boolean networks optimized for criticality
    Marco Möller, Tiago P. Peixoto
    New J. Phys. 17 043021 (2015)
    DOI: 10.1088/1367-2630/17/4/043021 

    @article{M_ller_2015,
    title={Maximum-entropy large-scale structures of Boolean networks optimized for criticality},
    volume={17},
    ISSN={1367-2630},
    url={http://dx.doi.org/10.1088/1367-2630/17/4/043021},
    DOI={10.1088/1367-2630/17/4/043021},
    number={4},
    journal={New Journal of Physics},
    publisher={IOP Publishing},
    author={Möller, Marco and Peixoto, Tiago P},
    year={2015},
    month=apr,
    pages={043021}
}
  29. Limits and Trade-Offs of Topological Network Robustness
    Christopher Priester, Sebastian Schmitt, Tiago P. Peixoto
    PLoS ONE 9(9): e108215 (2014)
    DOI: 10.1371/journal.pone.0108215 

    @article{Priester_2014,
    title={Limits and Trade-Offs of Topological Network Robustness},
    volume={9},
    ISSN={1932-6203},
    url={http://dx.doi.org/10.1371/journal.pone.0108215},
    DOI={10.1371/journal.pone.0108215},
    number={9},
    journal={PLoS ONE},
    publisher={Public Library of Science (PLoS)},
    author={Priester, Christopher and Schmitt, Sebastian and Peixoto, Tiago P.},
    editor={Gomez-Gardenes, Jesus},
    year={2014},
    month=sep,
    pages={e108215}
}
  30. Hierarchical block structures and high-resolution model selection in large networks
    Tiago P. Peixoto
    Phys. Rev. X 4, 011047 (2014)
    DOI: 10.1103/PhysRevX.4.011047

    Code is available. See the HOWTO.
    @article{Peixoto_2014,
    title={Hierarchical Block Structures and High-Resolution Model Selection in Large Networks},
    volume={4},
    ISSN={2160-3308},
    url={http://dx.doi.org/10.1103/PhysRevX.4.011047},
    DOI={10.1103/physrevx.4.011047},
    number={1},
    journal={Physical Review X},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2014},
    month=mar
}
  31. Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models
    Tiago P. Peixoto
    Phys. Rev. E 89, 012804 (2014)
    DOI: 10.1103/PhysRevE.89.012804

    Code is available. See the HOWTO.
    @article{Peixoto_2014,
    title={Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models},
    volume={89},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.89.012804},
    DOI={10.1103/physreve.89.012804},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2014},
    month=jan
}
  32. Eigenvalue Spectra of Modular Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 111 9 098701 (2013)
    DOI: 10.1103/PhysRevLett.111.098701 

    @article{Peixoto_2013,
    title={Eigenvalue Spectra of Modular Networks},
    volume={111},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.111.098701},
    DOI={10.1103/physrevlett.111.098701},
    number={9},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2013},
    month=aug
}
  33. Spontaneous centralization of control in a network of company ownerships
    Sebastian M. Krause, Tiago P. Peixoto, Stefan Bornholdt
    PLoS ONE 8(12): e80303 (2013)
    DOI: 10.1371/journal.pone.0080303 

    @article{Krause_2013,
    title={Spontaneous Centralization of Control in a Network of Company Ownerships},
    volume={8},
    ISSN={1932-6203},
    url={http://dx.doi.org/10.1371/journal.pone.0080303},
    DOI={10.1371/journal.pone.0080303},
    number={12},
    journal={PLoS ONE},
    publisher={Public Library of Science (PLoS)},
    author={Krause, Sebastian M. and Peixoto, Tiago P. and Bornholdt, Stefan},
    editor={Altmann, Eduardo G.},
    year={2013},
    month=dec,
    pages={e80303}
}
  34. Parsimonious Module Inference in Large Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 110 148701 (2013)
    DOI: 10.1103/PhysRevLett.110.148701

    Code is available. See the HOWTO.
    @article{Peixoto_2013,
    title={Parsimonious Module Inference in Large Networks},
    volume={110},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.110.148701},
    DOI={10.1103/physrevlett.110.148701},
    number={14},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2013},
    month=apr
}
  35. Evolution of Robust Network Topologies: Emergence of Central Backbones
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 109 11 118703 (2012)
    DOI: 10.1103/PhysRevLett.109.118703

    Coverage: Synopsis in Physics
    @article{Peixoto_2012,
    title={Evolution of Robust Network Topologies: Emergence of Central Backbones},
    volume={109},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.109.118703},
    DOI={10.1103/physrevlett.109.118703},
    number={11},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Bornholdt, Stefan},
    year={2012},
    month=sep
}
  36. Entropy of stochastic blockmodel ensembles
    Tiago P. Peixoto
    Phys. Rev. E 85 5 056122 (2012)
    DOI: 10.1103/PhysRevE.85.056122 

    @article{Peixoto_2012,
    title={Entropy of stochastic blockmodel ensembles},
    volume={85},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.85.056122},
    DOI={10.1103/physreve.85.056122},
    number={5},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2012},
    month=may
}
  37. No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 108 21 218702 (2012)
    DOI: 10.1103/PhysRevLett.108.218702

    Coverage: (Phys.org) High gas prices may be explained by self-organized cartel behavior, (Physics arXiv Blog) Cartels Are an Emergent Phenomenon, Say Complexity Theorists, (Jura Forum) Bremer Uni-Studie: Flächendeckend höhere Benzinpreise deuten nicht gleich auf Preisabsprachen hin, (kreiszeitung.de) Benzinpreis: Kein Hinweis auf Absprache
    @article{Peixoto_2012,
    title={No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game},
    volume={108},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.108.218702},
    DOI={10.1103/physrevlett.108.218702},
    number={21},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Bornholdt, Stefan},
    year={2012},
    month=may
}
  38. Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks
    Tiago P. Peixoto
    Phys. Rev. E 85 4 041908 (2012)
    DOI: 10.1103/PhysRevE.85.041908 

    @article{Peixoto_2012,
    title={Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks},
    volume={85},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.85.041908},
    DOI={10.1103/physreve.85.041908},
    number={4},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2012},
    month=apr
}
  39. Reliable dynamics in Boolean and continuous networks
    Eva Ackermann, Tiago P. Peixoto, Barbara Drossel
    New J. Phys. 14 12 123029 (2012)
    DOI: 10.1088/1367-2630/14/12/123029 

    @article{Ackermann_2012,
    title={Reliable dynamics in Boolean and continuous networks},
    volume={14},
    ISSN={1367-2630},
    url={http://dx.doi.org/10.1088/1367-2630/14/12/123029},
    DOI={10.1088/1367-2630/14/12/123029},
    number={12},
    journal={New Journal of Physics},
    publisher={IOP Publishing},
    author={Ackermann, Eva and Peixoto, Tiago P and Drossel, Barbara},
    year={2012},
    month=dec,
    pages={123029}
}
  40. The behavior of noise-resilient Boolean networks with diverse topologies
    Tiago P Peixoto
    J. Stat. Mech. 2012 01 P01006 (2012)
    DOI: 10.1088/1742-5468/2012/01/P01006 

    @article{Peixoto_2012,
    title={The behavior of noise-resilient Boolean networks with diverse topologies},
    volume={2012},
    ISSN={1742-5468},
    url={http://dx.doi.org/10.1088/1742-5468/2012/01/P01006},
    DOI={10.1088/1742-5468/2012/01/p01006},
    number={01},
    journal={Journal of Statistical Mechanics: Theory and Experiment},
    publisher={IOP Publishing},
    author={Peixoto, Tiago P},
    year={2012},
    month=jan,
    pages={P01006}
}
  41. Trust Transitivity in Social Networks
    Oliver Richters, Tiago P. Peixoto
    PLOS ONE 6 4 e18384 (2011)
    DOI: 10.1371/journal.pone.0018384 

    @article{Richters_2011,
    title={Trust Transitivity in Social Networks},
    volume={6},
    ISSN={1932-6203},
    url={http://dx.doi.org/10.1371/journal.pone.0018384},
    DOI={10.1371/journal.pone.0018384},
    number={4},
    journal={PLoS ONE},
    publisher={Public Library of Science (PLoS)},
    author={Richters, Oliver and Peixoto, Tiago P.},
    editor={Perc, Matjaz},
    year={2011},
    month=apr,
    pages={e18384}
}
  42. Density profile and polymer configurations for a polymer melt in a regular array of nanotubes
    Tiago P Peixoto, Barbara Drossel
    New J. Phys. 13 7 073030 (2011)
    DOI: 10.1088/1367-2630/13/7/073030 

    @article{Peixoto_2011,
    title={Density profile and polymer configurations for a polymer melt in a regular array of nanotubes},
    volume={13},
    ISSN={1367-2630},
    url={http://dx.doi.org/10.1088/1367-2630/13/7/073030},
    DOI={10.1088/1367-2630/13/7/073030},
    number={7},
    journal={New Journal of Physics},
    publisher={IOP Publishing},
    author={Peixoto, Tiago P and Drossel, Barbara},
    year={2011},
    month=jul,
    pages={073030}
}
  43. The phase diagram of random Boolean networks with nested canalizing functions
    T. P. Peixoto
    Eur. Phys. J. B 78 2 187–192 (2010)
    DOI: 10.1140/epjb/e2010-10559-0 

    @article{Peixoto_2010,
    title={The phase diagram of random Boolean networks with nested canalizing functions},
    volume={78},
    ISSN={1434-6036},
    url={http://dx.doi.org/10.1140/epjb/e2010-10559-0},
    DOI={10.1140/epjb/e2010-10559-0},
    number={2},
    journal={The European Physical Journal B},
    publisher={Springer Science and Business Media LLC},
    author={Peixoto, T. P.},
    year={2010},
    month=nov,
    pages={187–192}
}
  44. Boolean networks with robust and reliable trajectories
    Christoph Schmal, Tiago P Peixoto, Barbara Drossel
    New J. Phys. 12 11 113054 (2010)
    DOI: 10.1088/1367-2630/12/11/113054 

    @article{Schmal_2010,
    title={Boolean networks with robust and reliable trajectories},
    volume={12},
    ISSN={1367-2630},
    url={http://dx.doi.org/10.1088/1367-2630/12/11/113054},
    DOI={10.1088/1367-2630/12/11/113054},
    number={11},
    journal={New Journal of Physics},
    publisher={IOP Publishing},
    author={Schmal, Christoph and Peixoto, Tiago P and Drossel, Barbara},
    year={2010},
    month=nov,
    pages={113054}
}
  45. Redundancy and Error Resilience in Boolean Networks
    Tiago P. Peixoto
    Phys. Rev. Lett. 104 4 048701 (2010)
    DOI: 10.1103/PhysRevLett.104.048701 

    @article{Peixoto_2010,
    title={Redundancy and Error Resilience in Boolean Networks},
    volume={104},
    ISSN={1079-7114},
    url={http://dx.doi.org/10.1103/PhysRevLett.104.048701},
    DOI={10.1103/physrevlett.104.048701},
    number={4},
    journal={Physical Review Letters},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P.},
    year={2010},
    month=jan
}
  46. Spatiotemporal correlations of aftershock sequences
    Tiago P. Peixoto, Katharina Doblhoff-Dier, Jörn Davidsen
    J. Geophys. Res. 115 B10309 (2010)
    DOI: 10.1029/2010JB007626 

    @article{Peixoto_2010,
    title={Spatiotemporal correlations of aftershock sequences},
    volume={115},
    ISSN={0148-0227},
    url={http://dx.doi.org/10.1029/2010JB007626},
    DOI={10.1029/2010jb007626},
    number={B10},
    journal={Journal of Geophysical Research: Solid Earth},
    publisher={American Geophysical Union (AGU)},
    author={Peixoto, Tiago P. and Doblhoff‐Dier, Katharina and Davidsen, Jörn},
    year={2010},
    month=oct
}
  47. Polymer confinement effects in aligned carbon nanotubes arrays
    Pitamber Mahanandia, Jörg J. Schneider, Marina Khaneft, Bernd Stühn, Tiago P. Peixoto, Barbara Drossel
    Phys. Chem. Chem. Phys. 12 17 4407 (2010)
    DOI: 10.1039/b922906j 

    @article{Mahanandia_2010,
    title={Polymer confinement effects in aligned carbon nanotubes arrays},
    volume={12},
    ISSN={1463-9084},
    url={http://dx.doi.org/10.1039/b922906j},
    DOI={10.1039/b922906j},
    number={17},
    journal={Physical Chemistry Chemical Physics},
    publisher={Royal Society of Chemistry (RSC)},
    author={Mahanandia, Pitamber and Schneider, Jörg J. and Khaneft, Marina and Stühn, Bernd and Peixoto, Tiago P. and Drossel, Barbara},
    year={2010},
    pages={4407}
}
  48. Boolean networks with reliable dynamics
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 80 5 056102 (2009)
    DOI: 10.1103/PhysRevE.80.056102 

    @article{Peixoto_2009,
    title={Boolean networks with reliable dynamics},
    volume={80},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.80.056102},
    DOI={10.1103/physreve.80.056102},
    number={5},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Drossel, Barbara},
    year={2009},
    month=nov
}
  49. Noise in random Boolean networks
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 79 3 036108 (2009)
    DOI: 10.1103/PhysRevE.79.036108 

    @article{Peixoto_2009,
    title={Noise in random Boolean networks},
    volume={79},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.79.036108},
    DOI={10.1103/physreve.79.036108},
    number={3},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Drossel, Barbara},
    year={2009},
    month=mar
}
  50. Network of recurrent events for the Olami-Feder-Christensen model
    Tiago P. Peixoto, Jörn Davidsen
    Phys. Rev. E 77 6 066107 (2008)
    DOI: 10.1103/PhysRevE.77.066107 

    @article{Peixoto_2008,
    title={Network of recurrent events for the Olami-Feder-Christensen model},
    volume={77},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.77.066107},
    DOI={10.1103/physreve.77.066107},
    number={6},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Davidsen, Jörn},
    year={2008},
    month=jun
}
  51. Network of epicenters of the Olami-Feder-Christensen model of earthquakes
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 74 1 016126 (2006)
    DOI: 10.1103/PhysRevE.74.016126 

    @article{Peixoto_2006,
    title={Network of epicenters of the Olami-Feder-Christensen model of earthquakes},
    volume={74},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.74.016126},
    DOI={10.1103/physreve.74.016126},
    number={1},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Prado, Carmen P. C.},
    year={2006},
    month=jul
}
  52. Statistics of epicenters in the Olami-Feder-Christensen model in two and three dimensions
    Tiago P. Peixoto, Carmen P. C. Prado
    Physica A 342 1-2 171–177 (2004)
    DOI: 10.1016/j.physa.2004.04.075 

    @article{Peixoto_2004,
    title={Statistics of epicenters in the Olami–Feder–Christensen model in two and three dimensions},
    volume={342},
    ISSN={0378-4371},
    url={http://dx.doi.org/10.1016/j.physa.2004.04.075},
    DOI={10.1016/j.physa.2004.04.075},
    number={1–2},
    journal={Physica A: Statistical Mechanics and its Applications},
    publisher={Elsevier BV},
    author={Peixoto, Tiago P. and Prado, Carmen P.C.},
    year={2004},
    month=oct,
    pages={171–177}
}
  53. Distribution of epicenters in the Olami-Feder-Christensen model
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 69 2 025101 (2004)
    DOI: 10.1103/PhysRevE.69.025101 

    @article{Peixoto_2004,
    title={Distribution of epicenters in the Olami-Feder-Christensen model},
    volume={69},
    ISSN={1550-2376},
    url={http://dx.doi.org/10.1103/PhysRevE.69.025101},
    DOI={10.1103/physreve.69.025101},
    number={2},
    journal={Physical Review E},
    publisher={American Physical Society (APS)},
    author={Peixoto, Tiago P. and Prado, Carmen P. C.},
    year={2004},
    month=feb
}