Publications

Monographs and book chapters

1. Descriptive vs. inferential community detection in networks: pitfalls, myths, and half-truths ¶
   Tiago P. Peixoto
   Elements in the Structure and Dynamics of Complex Networks, Cambridge University Press (2023)
   DOI: 10.1017/9781009118897 [Show bibtex]
   
   Code is available. See the HOWTO.
   

   @book{Peixoto_2023,
       title={Descriptive vs. Inferential Community Detection in Networks: Pitfalls, Myths and Half-Truths},
       ISBN={9781009113007},
       url={http://dx.doi.org/10.1017/9781009118897},
       DOI={10.1017/9781009118897},
       publisher={Cambridge University Press},
       author={Peixoto, Tiago P.},
       year={2023},
       month=jul
   }

2. Modelling Temporal Networks with Markov Chains, Community Structures and Change Points ¶
   Tiago P. Peixoto, Martin Rosvall
   Chapter in “Temporal Network Theory,” edited by Holme P., Saramäki J. (Springer, 2023)
   DOI: 10.1007/978-3-031-30399-9_4 [Show bibtex]
   
   

   @inbook{Peixoto_2023,
       title={Modelling Temporal Networks with Markov Chains, Community Structures and Change Points},
       ISBN={9783031303999},
       ISSN={2509-9582},
       url={http://dx.doi.org/10.1007/978-3-031-30399-9_4},
       DOI={10.1007/978-3-031-30399-9_4},
       booktitle={Temporal Network Theory},
       publisher={Springer International Publishing},
       author={Peixoto, Tiago P. and Rosvall, Martin},
       year={2023},
       pages={65–82}
   }

3. Bayesian stochastic blockmodeling ¶
   Tiago P. Peixoto
   Chapter in “Advances in Network Clustering and Blockmodeling,” edited by P. Doreian, V. Batagelj, A. Ferligoj (Wiley, 2019)
   DOI: 10.1002/9781119483298.ch11 [Show bibtex]
   
   Code is available. See the HOWTO.
   

   @misc{Peixoto_2019,
       title={Bayesian Stochastic Blockmodeling},
       ISBN={9781119483298},
       url={http://dx.doi.org/10.1002/9781119483298.ch11},
       DOI={10.1002/9781119483298.ch11},
       journal={Advances in Network Clustering and Blockmodeling},
       publisher={Wiley},
       author={Peixoto, Tiago P.},
       year={2019},
       month=nov,
       pages={289–332}
   }

Pre-prints

1. Network reconstruction via the minimum description length principle ¶
   Tiago P. Peixoto
   2405.01015 [Show bibtex]
   
   DOI: 10.48550/arXiv.2405.01015
   

   @misc{https://doi.org/10.48550/arxiv.2405.01015,
       doi = {10.48550/ARXIV.2405.01015},
       url = {https://arxiv.org/abs/2405.01015},
       author = {Peixoto, Tiago P.},
       keywords = {Machine Learning (stat.ML), Machine Learning (cs.LG), Social and Information Networks (cs.SI), Data Analysis, Statistics and Probability (physics.data-an), Populations and Evolution (q-bio.PE), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences, FOS: Biological sciences, FOS: Biological sciences},
       title = {Network reconstruction via the minimum description length principle},
       publisher = {arXiv},
       year = {2024},
       copyright = {Creative Commons Attribution Share Alike 4.0 International}
   }

2. Scalable network reconstruction in subquadratic time ¶
   Tiago P. Peixoto
   2401.01404 [Show bibtex]
   
   DOI: 10.48550/arXiv.2401.01404
   

   @misc{https://doi.org/10.48550/arxiv.2401.01404,
       doi = {10.48550/ARXIV.2401.01404},
       url = {https://arxiv.org/abs/2401.01404},
       author = {Peixoto, Tiago P.},
       keywords = {Data Structures and Algorithms (cs.DS), Machine Learning (cs.LG), Data Analysis, Statistics and Probability (physics.data-an), Computation (stat.CO), Machine Learning (stat.ML), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences},
       title = {Scalable network reconstruction in subquadratic time},
       publisher = {arXiv},
       year = {2024},
       copyright = {Creative Commons Attribution Share Alike 4.0 International}
   }

Journal Papers

1. Recommendations for sharing network data and materials¶
   Zachary P. Neal, Zack W. Almquist, James Bagrow, Aaron Clauset, Jana Diesner, Emmanuel Lazega, Juniper Lovato, James Moody, Tiago P. Peixoto, Zachary Steinert-Threlkeld, Andreia Sofia Teixeira
   Network Science 1-14 (2024)
   DOI: 10.1017/nws.2024.16 [Show bibtex]
   
   

   @article{Neal_2024,
       title={Recommendations for sharing network data and materials},
       ISSN={2050-1250},
       url={http://dx.doi.org/10.1017/nws.2024.16},
       DOI={10.1017/nws.2024.16},
       journal={Network Science},
       publisher={Cambridge University Press (CUP)},
       author={Neal, Zachary P. and Almquist, Zack W. and Bagrow, James and Clauset, Aaron and Diesner, Jana and Lazega, Emmanuel and Lovato, Juniper and Moody, James and Peixoto, Tiago P. and Steinert-Threlkeld, Zachary and Teixeira, Andreia Sofia},
       year={2024},
       month=oct,
       pages={1–14}
   }

2. Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection¶
   Tiago P. Peixoto, Alec Kirkley
   Phys. Rev. E 108, 024309 (2023)
   DOI: 10.1103/PhysRevE.108.024309 [Show bibtex]
   
   

   @article{Peixoto_2023,
       title={Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection},
       volume={108},
       ISSN={2470-0053},
       url={http://dx.doi.org/10.1103/PhysRevE.108.024309},
       DOI={10.1103/physreve.108.024309},
       number={2},
       journal={Physical Review E},
       publisher={American Physical Society (APS)},
       author={Peixoto, Tiago P. and Kirkley, Alec},
       year={2023},
       month=aug
   }

3. Statistical inference links data and theory in network science¶
   Leto Peel, Tiago P. Peixoto, Manlio De Domenico
   Nature Communications 13, 6794 (2022)
   DOI: 10.1038/s41467-022-34267-9 [Show bibtex]
   
   

   @article{Peel_2022,
       title={Statistical inference links data and theory in network science},
       volume={13},
       ISSN={2041-1723},
       url={http://dx.doi.org/10.1038/s41467-022-34267-9},
       DOI={10.1038/s41467-022-34267-9},
       number={1},
       journal={Nature Communications},
       publisher={Springer Science and Business Media LLC},
       author={Peel, Leto and Peixoto, Tiago P. and De Domenico, Manlio},
       year={2022},
       month=nov
   }

4. Ordered community detection in directed networks¶
   Tiago P. Peixoto
   Phys. Rev. E 106, 024305 (2022)
   DOI: 10.1103/PhysRevE.106.024305 [Show bibtex]
   
   Code is available. See the HOWTO.
   

   @article{Peixoto_2022,
       title={Ordered community detection in directed networks},
       volume={106},
       ISSN={2470-0053},
       url={http://dx.doi.org/10.1103/PhysRevE.106.024305},
       DOI={10.1103/physreve.106.024305},
       number={2},
       journal={Physical Review E},
       publisher={American Physical Society (APS)},
       author={Peixoto, Tiago P.},
       year={2022},
       month=aug
   }

5. Disentangling homophily, community structure and triadic closure in networks¶
   Tiago P. Peixoto
   Phys. Rev. X 12, 011004 (2022)
   DOI: 10.1103/PhysRevX.12.011004 [Show bibtex]
   
   Code is available. See the HOWTO.
   

   @article{Peixoto_2022,
       title={Disentangling Homophily, Community Structure, and Triadic Closure in Networks},
       volume={12},
       ISSN={2160-3308},
       url={http://dx.doi.org/10.1103/PhysRevX.12.011004},
       DOI={10.1103/physrevx.12.011004},
       number={1},
       journal={Physical Review X},
       publisher={American Physical Society (APS)},
       author={Peixoto, Tiago P.},
       year={2022},
       month=jan
   }

6. Systematic assessment of the quality of fit of the stochastic block model for empirical networks¶
   Felipe Vaca-Ramírez, Tiago P. Peixoto
   Phys. Rev. E 105, 054311 (2022)
   DOI: 10.1103/PhysRevE.105.054311 [Show bibtex]
   
   

   @article{Vaca_Ram_rez_2022,
       title={Systematic assessment of the quality of fit of the stochastic block model for empirical networks},
       volume={105},
       ISSN={2470-0053},
       url={http://dx.doi.org/10.1103/PhysRevE.105.054311},
       DOI={10.1103/physreve.105.054311},
       number={5},
       journal={Physical Review E},
       publisher={American Physical Society (APS)},
       author={Vaca-Ramírez, Felipe and Peixoto, Tiago P.},
       year={2022},
       month=may
   }

7. The physics of higher-order interactions in complex systems¶
   Federico Battiston, Enrico Amico, Alain Barrat, Ginestra Bianconi, Guilherme Ferraz de Arruda, Benedetta Franceschiello, Iacopo Iacopini, Sonia Kéfi, Vito Latora, Yamir Moreno, Micah M. Murray, Tiago P. Peixoto, Francesco Vaccarino, and Giovanni Petri
   Nature Physics 17, 1093–1098 (2021)
   DOI: 10.1038/s41567-021-01371-4 [Show bibtex]
   
   

   @article{Battiston_2021,
       title={The physics of higher-order interactions in complex systems},
       volume={17},
       ISSN={1745-2481},
       url={http://dx.doi.org/10.1038/s41567-021-01371-4},
       DOI={10.1038/s41567-021-01371-4},
       number={10},
       journal={Nature Physics},
       publisher={Springer Science and Business Media LLC},
       author={Battiston, Federico and Amico, Enrico and Barrat, Alain and Bianconi, Ginestra and Ferraz de Arruda, Guilherme and Franceschiello, Benedetta and Iacopini, Iacopo and Kéfi, Sonia and Latora, Vito and Moreno, Yamir and Murray, Micah M. and Peixoto, Tiago P. and Vaccarino, Francesco and Petri, Giovanni},
       year={2021},
       month=oct,
       pages={1093–1098}
   }

8. Revealing consensus and dissensus between network partitions¶
   Tiago P. Peixoto
   Phys. Rev. X 11 021003 (2021)
   DOI: 10.1103/PhysRevX.11.021003 [Show bibtex]
   
   Code is available. See the HOWTO.
   

   @article{Peixoto_2021,
       title={Revealing Consensus and Dissensus between Network Partitions},
       volume={11},
       ISSN={2160-3308},
       url={http://dx.doi.org/10.1103/PhysRevX.11.021003},
       DOI={10.1103/physrevx.11.021003},
       number={2},
       journal={Physical Review X},
       publisher={American Physical Society (APS)},
       author={Peixoto, Tiago P.},
       year={2021},
       month=apr
   }

9. Hypergraph reconstruction from network data¶
   Jean-Gabriel Young, Giovanni Petri, Tiago P. Peixoto
   Commun Phys 4, 135 (2021)
   DOI: 10.1038/s42005-021-00637-w [Show bibtex]
   
   Code is available. See the documentation.
   

   @article{Young_2021,
       title={Hypergraph reconstruction from network data},
       volume={4},
       ISSN={2399-3650},
       url={http://dx.doi.org/10.1038/s42005-021-00637-w},
       DOI={10.1038/s42005-021-00637-w},
       number={1},
       journal={Communications Physics},
       publisher={Springer Science and Business Media LLC},
       author={Young, Jean-Gabriel and Petri, Giovanni and Peixoto, Tiago P.},
       year={2021},
       month=jun
   }

10. Multilayer networks for text analysis with multiple data types¶
    Charles C. Hyland, Yuanming Tao, Lamiae Azizi, Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    EPJ Data Science volume 10, 33 (2021)
    DOI: 10.1140/epjds/s13688-021-00288-5 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Hyland_2021,
        title={Multilayer networks for text analysis with multiple data types},
        volume={10},
        ISSN={2193-1127},
        url={http://dx.doi.org/10.1140/epjds/s13688-021-00288-5},
        DOI={10.1140/epjds/s13688-021-00288-5},
        number={1},
        journal={EPJ Data Science},
        publisher={Springer Science and Business Media LLC},
        author={Hyland, Charles C. and Tao, Yuanming and Azizi, Lamiae and Gerlach, Martin and Peixoto, Tiago P. and Altmann, Eduardo G.},
        year={2021},
        month=jun
    }

11. Statistical inference of assortative community structures¶
    Lizhi Zhang, Tiago P. Peixoto
    Phys. Rev. Research 2 043271 (2020)
    DOI: 10.1103/PhysRevResearch.2.043271 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Zhang_2020,
        title={Statistical inference of assortative community structures},
        volume={2},
        ISSN={2643-1564},
        url={http://dx.doi.org/10.1103/PhysRevResearch.2.043271},
        DOI={10.1103/physrevresearch.2.043271},
        number={4},
        journal={Physical Review Research},
        publisher={American Physical Society (APS)},
        author={Zhang, Lizhi and Peixoto, Tiago P.},
        year={2020},
        month=nov
    }

12. Merge-split Markov chain Monte Carlo for community detection¶
    Tiago P. Peixoto
    Phys. Rev. E 102 012305 (2020)
    DOI: 10.1103/PhysRevE.102.012305 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2020,
        title={Merge-split Markov chain Monte Carlo for community detection},
        volume={102},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.102.012305},
        DOI={10.1103/physreve.102.012305},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2020},
        month=jul
    }

13. Latent Poisson models for networks with heterogeneous density¶
    Tiago P. Peixoto
    Phys. Rev. E 102 012309 (2020)
    DOI: 10.1103/PhysRevE.102.012309 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2020,
        title={Latent Poisson models for networks with heterogeneous density},
        volume={102},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.102.012309},
        DOI={10.1103/physreve.102.012309},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2020},
        month=jul
    }

14. Null models for multi-optimized large-scale network structures¶
    Sebastian Morel-Balbi, Tiago P. Peixoto
    Phys. Rev. E 102 032306 (2020)
    DOI: 10.1103/PhysRevE.102.032306 [Show bibtex]
    
    

    @article{Morel_Balbi_2020,
        title={Null models for multioptimized large-scale network structures},
        volume={102},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.102.032306},
        DOI={10.1103/physreve.102.032306},
        number={3},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Morel-Balbi, Sebastian and Peixoto, Tiago P.},
        year={2020},
        month=sep
    }

15. Network reconstruction and community detection from dynamics¶
    Tiago P. Peixoto
    Phys. Rev. Lett. 123 128301 (2019)
    DOI: 10.1103/PhysRevLett.123.128301 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2019,
        title={Network Reconstruction and Community Detection from Dynamics},
        volume={123},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.123.128301},
        DOI={10.1103/physrevlett.123.128301},
        number={12},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2019},
        month=sep
    }

16. Reconstructing networks with unknown and heterogeneous errors¶
    Tiago P. Peixoto
    Phys. Rev. X 8 041011 (2018)
    DOI: 10.1103/PhysRevX.8.041011 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2018,
        title={Reconstructing Networks with Unknown and Heterogeneous Errors},
        volume={8},
        ISSN={2160-3308},
        url={http://dx.doi.org/10.1103/PhysRevX.8.041011},
        DOI={10.1103/physrevx.8.041011},
        number={4},
        journal={Physical Review X},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2018},
        month=oct
    }

17. A network approach to topic models¶
    Martin Gerlach, Tiago P. Peixoto, Eduardo G. Altmann
    Science Advances 4 eaaq1360 (2018)
    DOI: 10.1126/sciadv.aaq1360 [Show bibtex]
    
    Code is available. See also the network inference HOWTO.
    

    @article{Gerlach_2018,
        title={A network approach to topic models},
        volume={4},
        ISSN={2375-2548},
        url={http://dx.doi.org/10.1126/sciadv.aaq1360},
        DOI={10.1126/sciadv.aaq1360},
        number={7},
        journal={Science Advances},
        publisher={American Association for the Advancement of Science (AAAS)},
        author={Gerlach, Martin and Peixoto, Tiago P. and Altmann, Eduardo G.},
        year={2018},
        month=jul
    }

18. Nonparametric weighted stochastic block models¶
    Tiago P. Peixoto
    Phys. Rev. E 97 012306 (2018)
    DOI: 10.1103/PhysRevE.97.012306 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2018,
        title={Nonparametric weighted stochastic block models},
        volume={97},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.97.012306},
        DOI={10.1103/physreve.97.012306},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2018},
        month=jan
    }

19. Change points, memory and epidemic spreading in temporal networks¶
    Tiago P. Peixoto, Laetitia Gauvin
    Sci. Rep. 8 15511 (2018)
    DOI: 10.1038/s41598-018-33313-1 [Show bibtex]
    
    

    @article{P_Peixoto_2018,
        title={Change points, memory and epidemic spreading in temporal networks},
        volume={8},
        ISSN={2045-2322},
        url={http://dx.doi.org/10.1038/s41598-018-33313-1},
        DOI={10.1038/s41598-018-33313-1},
        number={1},
        journal={Scientific Reports},
        publisher={Springer Science and Business Media LLC},
        author={P. Peixoto, Tiago and Gauvin, Laetitia},
        year={2018},
        month=oct
    }

20. Consistencies and inconsistencies between model selection and link prediction in networks¶
    Toni Vallès-Català, Tiago P. Peixoto, Roger Guimerà, Marta Sales-Pardo
    Phys. Rev. E 97 062316 (2018)
    DOI: 10.1103/PhysRevE.97.062316 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Vall_s_Catal__2018,
        title={Consistencies and inconsistencies between model selection and link prediction in networks},
        volume={97},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.97.062316},
        DOI={10.1103/physreve.97.062316},
        number={6},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Vallès-Català, Toni and Peixoto, Tiago P. and Sales-Pardo, Marta and Guimerà, Roger},
        year={2018},
        month=jun
    }

21. Modeling sequences and temporal networks with dynamic community structures¶
    Tiago P. Peixoto, Martin Rosvall
    Nature Communications 8, 582 (2017)
    DOI: 10.1038/s41467-017-00148-9 [Show bibtex]
    
    

    @article{Peixoto_2017,
        title={Modelling sequences and temporal networks with dynamic community structures},
        volume={8},
        ISSN={2041-1723},
        url={http://dx.doi.org/10.1038/s41467-017-00148-9},
        DOI={10.1038/s41467-017-00148-9},
        number={1},
        journal={Nature Communications},
        publisher={Springer Science and Business Media LLC},
        author={Peixoto, Tiago P. and Rosvall, Martin},
        year={2017},
        month=sep
    }

22. Nonparametric Bayesian inference of the microcanonical stochastic block model¶
    Tiago P. Peixoto
    Phys. Rev. E 95 012317 (2017)
    DOI: 10.1103/PhysRevE.95.012317 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2017,
        title={Nonparametric Bayesian inference of the microcanonical stochastic block model},
        volume={95},
        ISSN={2470-0053},
        url={http://dx.doi.org/10.1103/PhysRevE.95.012317},
        DOI={10.1103/physreve.95.012317},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2017},
        month=jan
    }

23. Disease localization in multilayer networks¶
    Guilherme Ferraz de Arruda, Emanuele Cozzo, Tiago P. Peixoto, Francisco A. Rodrigues, Yamir Moreno
    Phys. Rev. X 7 1 011014 (2017)
    DOI: 10.1103/PhysRevX.7.011014 [Show bibtex]
    
    

    @article{de_Arruda_2017,
        title={Disease Localization in Multilayer Networks},
        volume={7},
        ISSN={2160-3308},
        url={http://dx.doi.org/10.1103/PhysRevX.7.011014},
        DOI={10.1103/physrevx.7.011014},
        number={1},
        journal={Physical Review X},
        publisher={American Physical Society (APS)},
        author={de Arruda, Guilherme Ferraz and Cozzo, Emanuele and Peixoto, Tiago P. and Rodrigues, Francisco A. and Moreno, Yamir},
        year={2017},
        month=feb
    }

24. Network structure, metadata, and the prediction of missing nodes and annotations¶
    Darko Hric, Tiago P. Peixoto, Santo Fortunato
    Phys. Rev. X 6 3 031038 (2016)
    DOI: 10.1103/PhysRevX.6.031038 [Show bibtex]
    
    

    @article{Hric_2016,
        title={Network Structure, Metadata, and the Prediction of Missing Nodes and Annotations},
        volume={6},
        ISSN={2160-3308},
        url={http://dx.doi.org/10.1103/PhysRevX.6.031038},
        DOI={10.1103/physrevx.6.031038},
        number={3},
        journal={Physical Review X},
        publisher={American Physical Society (APS)},
        author={Hric, Darko and Peixoto, Tiago P. and Fortunato, Santo},
        year={2016},
        month=sep
    }

25. Generalized communities in networks¶
    M. E. J. Newman, Tiago P. Peixoto
    Phys. Rev. Lett. 115, 088701 (2015)
    DOI: 10.1103/PhysRevLett.115.088701 [Show bibtex]
    
    Cover of the PRL issue!
    

    @article{Newman_2015,
        title={Generalized Communities in Networks},
        volume={115},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.115.088701},
        DOI={10.1103/physrevlett.115.088701},
        number={8},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Newman, M. E. J. and Peixoto, Tiago P.},
        year={2015},
        month=aug
    }

26. Sampling motif-constrained ensembles of networks¶
    Rico Fisher, Jorge C. Leitão, Tiago P. Peixoto, Eduardo G. Altmann
    Phys. Rev. Lett. 115, 188701 (2015)
    DOI: 10.1103/PhysRevLett.115.188701 [Show bibtex]
    
    

    @article{Fischer_2015,
        title={Sampling Motif-Constrained Ensembles of Networks},
        volume={115},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.115.188701},
        DOI={10.1103/physrevlett.115.188701},
        number={18},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Fischer, Rico and Leit√£o, Jorge C. and Peixoto, Tiago P. and Altmann, Eduardo G.},
        year={2015},
        month=oct
    }

27. Inferring the mesoscale structure of layered, edge-valued and time-varying networks¶
    Tiago P. Peixoto
    Phys. Rev. E 92, 042807 (2015)
    DOI: 10.1103/PhysRevE.92.042807 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2015,
        title={Inferring the mesoscale structure of layered, edge-valued, and time-varying networks},
        volume={92},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.92.042807},
        DOI={10.1103/physreve.92.042807},
        number={4},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2015},
        month=oct
    }

28. Model selection and hypothesis testing for large-scale network models with overlapping groups¶
    Tiago P. Peixoto
    Phys. Rev. X 5, 011033 (2015)
    DOI: 10.1103/PhysRevX.5.011033 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2015,
        title={Model Selection and Hypothesis Testing for Large-Scale Network Models with Overlapping Groups},
        volume={5},
        ISSN={2160-3308},
        url={http://dx.doi.org/10.1103/PhysRevX.5.011033},
        DOI={10.1103/physrevx.5.011033},
        number={1},
        journal={Physical Review X},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2015},
        month=mar
    }

29. Maximum-entropy large-scale structures of Boolean networks optimized for criticality¶
    Marco Möller, Tiago P. Peixoto
    New J. Phys. 17 043021 (2015)
    DOI: 10.1088/1367-2630/17/4/043021 [Show bibtex]
    
    

    @article{M_ller_2015,
        title={Maximum-entropy large-scale structures of Boolean networks optimized for criticality},
        volume={17},
        ISSN={1367-2630},
        url={http://dx.doi.org/10.1088/1367-2630/17/4/043021},
        DOI={10.1088/1367-2630/17/4/043021},
        number={4},
        journal={New Journal of Physics},
        publisher={IOP Publishing},
        author={Möller, Marco and Peixoto, Tiago P},
        year={2015},
        month=apr,
        pages={043021}
    }

30. Limits and Trade-Offs of Topological Network Robustness¶
    Christopher Priester, Sebastian Schmitt, Tiago P. Peixoto
    PLoS ONE 9(9): e108215 (2014)
    DOI: 10.1371/journal.pone.0108215 [Show bibtex]
    
    

    @article{Priester_2014,
        title={Limits and Trade-Offs of Topological Network Robustness},
        volume={9},
        ISSN={1932-6203},
        url={http://dx.doi.org/10.1371/journal.pone.0108215},
        DOI={10.1371/journal.pone.0108215},
        number={9},
        journal={PLoS ONE},
        publisher={Public Library of Science (PLoS)},
        author={Priester, Christopher and Schmitt, Sebastian and Peixoto, Tiago P.},
        editor={Gomez-Gardenes, Jesus},
        year={2014},
        month=sep,
        pages={e108215}
    }

31. Hierarchical block structures and high-resolution model selection in large networks¶
    Tiago P. Peixoto
    Phys. Rev. X 4, 011047 (2014)
    DOI: 10.1103/PhysRevX.4.011047 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2014,
        title={Hierarchical Block Structures and High-Resolution Model Selection in Large Networks},
        volume={4},
        ISSN={2160-3308},
        url={http://dx.doi.org/10.1103/PhysRevX.4.011047},
        DOI={10.1103/physrevx.4.011047},
        number={1},
        journal={Physical Review X},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2014},
        month=mar
    }

32. Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models¶
    Tiago P. Peixoto
    Phys. Rev. E 89, 012804 (2014)
    DOI: 10.1103/PhysRevE.89.012804 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2014,
        title={Efficient Monte Carlo and greedy heuristic for the inference of stochastic block models},
        volume={89},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.89.012804},
        DOI={10.1103/physreve.89.012804},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2014},
        month=jan
    }

33. Eigenvalue Spectra of Modular Networks¶
    Tiago P. Peixoto
    Phys. Rev. Lett. 111 9 098701 (2013)
    DOI: 10.1103/PhysRevLett.111.098701 [Show bibtex]
    
    

    @article{Peixoto_2013,
        title={Eigenvalue Spectra of Modular Networks},
        volume={111},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.111.098701},
        DOI={10.1103/physrevlett.111.098701},
        number={9},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2013},
        month=aug
    }

34. Spontaneous centralization of control in a network of company ownerships¶
    Sebastian M. Krause, Tiago P. Peixoto, Stefan Bornholdt
    PLoS ONE 8(12): e80303 (2013)
    DOI: 10.1371/journal.pone.0080303 [Show bibtex]
    
    

    @article{Krause_2013,
        title={Spontaneous Centralization of Control in a Network of Company Ownerships},
        volume={8},
        ISSN={1932-6203},
        url={http://dx.doi.org/10.1371/journal.pone.0080303},
        DOI={10.1371/journal.pone.0080303},
        number={12},
        journal={PLoS ONE},
        publisher={Public Library of Science (PLoS)},
        author={Krause, Sebastian M. and Peixoto, Tiago P. and Bornholdt, Stefan},
        editor={Altmann, Eduardo G.},
        year={2013},
        month=dec,
        pages={e80303}
    }

35. Parsimonious Module Inference in Large Networks¶
    Tiago P. Peixoto
    Phys. Rev. Lett. 110 148701 (2013)
    DOI: 10.1103/PhysRevLett.110.148701 [Show bibtex]
    
    Code is available. See the HOWTO.
    

    @article{Peixoto_2013,
        title={Parsimonious Module Inference in Large Networks},
        volume={110},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.110.148701},
        DOI={10.1103/physrevlett.110.148701},
        number={14},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2013},
        month=apr
    }

36. Evolution of Robust Network Topologies: Emergence of Central Backbones¶
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 109 11 118703 (2012)
    DOI: 10.1103/PhysRevLett.109.118703 [Show bibtex]
    
    Coverage: Synopsis in Physics
    

    @article{Peixoto_2012,
        title={Evolution of Robust Network Topologies: Emergence of Central Backbones},
        volume={109},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.109.118703},
        DOI={10.1103/physrevlett.109.118703},
        number={11},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Bornholdt, Stefan},
        year={2012},
        month=sep
    }

37. Entropy of stochastic blockmodel ensembles¶
    Tiago P. Peixoto
    Phys. Rev. E 85 5 056122 (2012)
    DOI: 10.1103/PhysRevE.85.056122 [Show bibtex]
    
    

    @article{Peixoto_2012,
        title={Entropy of stochastic blockmodel ensembles},
        volume={85},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.85.056122},
        DOI={10.1103/physreve.85.056122},
        number={5},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2012},
        month=may
    }

38. No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game¶
    Tiago P. Peixoto, Stefan Bornholdt
    Phys. Rev. Lett. 108 21 218702 (2012)
    DOI: 10.1103/PhysRevLett.108.218702 [Show bibtex]
    
    Coverage: (Phys.org) High gas prices may be explained by self-organized cartel behavior, (Physics arXiv Blog) Cartels Are an Emergent Phenomenon, Say Complexity Theorists, (Jura Forum) Bremer Uni-Studie: Flächendeckend höhere Benzinpreise deuten nicht gleich auf Preisabsprachen hin, (kreiszeitung.de) Benzinpreis: Kein Hinweis auf Absprache
    

    @article{Peixoto_2012,
        title={No Need for Conspiracy: Self-Organized Cartel Formation in a Modified Trust Game},
        volume={108},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.108.218702},
        DOI={10.1103/physrevlett.108.218702},
        number={21},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Bornholdt, Stefan},
        year={2012},
        month=may
    }

39. Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks¶
    Tiago P. Peixoto
    Phys. Rev. E 85 4 041908 (2012)
    DOI: 10.1103/PhysRevE.85.041908 [Show bibtex]
    
    

    @article{Peixoto_2012,
        title={Emergence of robustness against noise: A structural phase transition in evolved models of gene regulatory networks},
        volume={85},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.85.041908},
        DOI={10.1103/physreve.85.041908},
        number={4},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2012},
        month=apr
    }

40. Reliable dynamics in Boolean and continuous networks¶
    Eva Ackermann, Tiago P. Peixoto, Barbara Drossel
    New J. Phys. 14 12 123029 (2012)
    DOI: 10.1088/1367-2630/14/12/123029 [Show bibtex]
    
    

    @article{Ackermann_2012,
        title={Reliable dynamics in Boolean and continuous networks},
        volume={14},
        ISSN={1367-2630},
        url={http://dx.doi.org/10.1088/1367-2630/14/12/123029},
        DOI={10.1088/1367-2630/14/12/123029},
        number={12},
        journal={New Journal of Physics},
        publisher={IOP Publishing},
        author={Ackermann, Eva and Peixoto, Tiago P and Drossel, Barbara},
        year={2012},
        month=dec,
        pages={123029}
    }

41. The behavior of noise-resilient Boolean networks with diverse topologies¶
    Tiago P Peixoto
    J. Stat. Mech. 2012 01 P01006 (2012)
    DOI: 10.1088/1742-5468/2012/01/P01006 [Show bibtex]
    
    

    @article{Peixoto_2012,
        title={The behavior of noise-resilient Boolean networks with diverse topologies},
        volume={2012},
        ISSN={1742-5468},
        url={http://dx.doi.org/10.1088/1742-5468/2012/01/P01006},
        DOI={10.1088/1742-5468/2012/01/p01006},
        number={01},
        journal={Journal of Statistical Mechanics: Theory and Experiment},
        publisher={IOP Publishing},
        author={Peixoto, Tiago P},
        year={2012},
        month=jan,
        pages={P01006}
    }

42. Trust Transitivity in Social Networks¶
    Oliver Richters, Tiago P. Peixoto
    PLOS ONE 6 4 e18384 (2011)
    DOI: 10.1371/journal.pone.0018384 [Show bibtex]
    
    

    @article{Richters_2011,
        title={Trust Transitivity in Social Networks},
        volume={6},
        ISSN={1932-6203},
        url={http://dx.doi.org/10.1371/journal.pone.0018384},
        DOI={10.1371/journal.pone.0018384},
        number={4},
        journal={PLoS ONE},
        publisher={Public Library of Science (PLoS)},
        author={Richters, Oliver and Peixoto, Tiago P.},
        editor={Perc, Matjaz},
        year={2011},
        month=apr,
        pages={e18384}
    }

43. Density profile and polymer configurations for a polymer melt in a regular array of nanotubes¶
    Tiago P Peixoto, Barbara Drossel
    New J. Phys. 13 7 073030 (2011)
    DOI: 10.1088/1367-2630/13/7/073030 [Show bibtex]
    
    

    @article{Peixoto_2011,
        title={Density profile and polymer configurations for a polymer melt in a regular array of nanotubes},
        volume={13},
        ISSN={1367-2630},
        url={http://dx.doi.org/10.1088/1367-2630/13/7/073030},
        DOI={10.1088/1367-2630/13/7/073030},
        number={7},
        journal={New Journal of Physics},
        publisher={IOP Publishing},
        author={Peixoto, Tiago P and Drossel, Barbara},
        year={2011},
        month=jul,
        pages={073030}
    }

44. The phase diagram of random Boolean networks with nested canalizing functions¶
    T. P. Peixoto
    Eur. Phys. J. B 78 2 187–192 (2010)
    DOI: 10.1140/epjb/e2010-10559-0 [Show bibtex]
    
    

    @article{Peixoto_2010,
        title={The phase diagram of random Boolean networks with nested canalizing functions},
        volume={78},
        ISSN={1434-6036},
        url={http://dx.doi.org/10.1140/epjb/e2010-10559-0},
        DOI={10.1140/epjb/e2010-10559-0},
        number={2},
        journal={The European Physical Journal B},
        publisher={Springer Science and Business Media LLC},
        author={Peixoto, T. P.},
        year={2010},
        month=nov,
        pages={187–192}
    }

45. Boolean networks with robust and reliable trajectories¶
    Christoph Schmal, Tiago P Peixoto, Barbara Drossel
    New J. Phys. 12 11 113054 (2010)
    DOI: 10.1088/1367-2630/12/11/113054 [Show bibtex]
    
    

    @article{Schmal_2010,
        title={Boolean networks with robust and reliable trajectories},
        volume={12},
        ISSN={1367-2630},
        url={http://dx.doi.org/10.1088/1367-2630/12/11/113054},
        DOI={10.1088/1367-2630/12/11/113054},
        number={11},
        journal={New Journal of Physics},
        publisher={IOP Publishing},
        author={Schmal, Christoph and Peixoto, Tiago P and Drossel, Barbara},
        year={2010},
        month=nov,
        pages={113054}
    }

46. Redundancy and Error Resilience in Boolean Networks¶
    Tiago P. Peixoto
    Phys. Rev. Lett. 104 4 048701 (2010)
    DOI: 10.1103/PhysRevLett.104.048701 [Show bibtex]
    
    

    @article{Peixoto_2010,
        title={Redundancy and Error Resilience in Boolean Networks},
        volume={104},
        ISSN={1079-7114},
        url={http://dx.doi.org/10.1103/PhysRevLett.104.048701},
        DOI={10.1103/physrevlett.104.048701},
        number={4},
        journal={Physical Review Letters},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P.},
        year={2010},
        month=jan
    }

47. Spatiotemporal correlations of aftershock sequences¶
    Tiago P. Peixoto, Katharina Doblhoff-Dier, Jörn Davidsen
    J. Geophys. Res. 115 B10309 (2010)
    DOI: 10.1029/2010JB007626 [Show bibtex]
    
    

    @article{Peixoto_2010,
        title={Spatiotemporal correlations of aftershock sequences},
        volume={115},
        ISSN={0148-0227},
        url={http://dx.doi.org/10.1029/2010JB007626},
        DOI={10.1029/2010jb007626},
        number={B10},
        journal={Journal of Geophysical Research: Solid Earth},
        publisher={American Geophysical Union (AGU)},
        author={Peixoto, Tiago P. and Doblhoff‐Dier, Katharina and Davidsen, Jörn},
        year={2010},
        month=oct
    }

48. Polymer confinement effects in aligned carbon nanotubes arrays¶
    Pitamber Mahanandia, Jörg J. Schneider, Marina Khaneft, Bernd Stühn, Tiago P. Peixoto, Barbara Drossel
    Phys. Chem. Chem. Phys. 12 17 4407 (2010)
    DOI: 10.1039/b922906j [Show bibtex]
    
    

    @article{Mahanandia_2010,
        title={Polymer confinement effects in aligned carbon nanotubes arrays},
        volume={12},
        ISSN={1463-9084},
        url={http://dx.doi.org/10.1039/b922906j},
        DOI={10.1039/b922906j},
        number={17},
        journal={Physical Chemistry Chemical Physics},
        publisher={Royal Society of Chemistry (RSC)},
        author={Mahanandia, Pitamber and Schneider, Jörg J. and Khaneft, Marina and Stühn, Bernd and Peixoto, Tiago P. and Drossel, Barbara},
        year={2010},
        pages={4407}
    }

49. Boolean networks with reliable dynamics¶
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 80 5 056102 (2009)
    DOI: 10.1103/PhysRevE.80.056102 [Show bibtex]
    
    

    @article{Peixoto_2009,
        title={Boolean networks with reliable dynamics},
        volume={80},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.80.056102},
        DOI={10.1103/physreve.80.056102},
        number={5},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Drossel, Barbara},
        year={2009},
        month=nov
    }

50. Noise in random Boolean networks¶
    Tiago P. Peixoto, Barbara Drossel
    Phys. Rev. E 79 3 036108 (2009)
    DOI: 10.1103/PhysRevE.79.036108 [Show bibtex]
    
    

    @article{Peixoto_2009,
        title={Noise in random Boolean networks},
        volume={79},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.79.036108},
        DOI={10.1103/physreve.79.036108},
        number={3},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Drossel, Barbara},
        year={2009},
        month=mar
    }

51. Network of recurrent events for the Olami-Feder-Christensen model¶
    Tiago P. Peixoto, Jörn Davidsen
    Phys. Rev. E 77 6 066107 (2008)
    DOI: 10.1103/PhysRevE.77.066107 [Show bibtex]
    
    

    @article{Peixoto_2008,
        title={Network of recurrent events for the Olami-Feder-Christensen model},
        volume={77},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.77.066107},
        DOI={10.1103/physreve.77.066107},
        number={6},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Davidsen, Jörn},
        year={2008},
        month=jun
    }

52. Network of epicenters of the Olami-Feder-Christensen model of earthquakes¶
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 74 1 016126 (2006)
    DOI: 10.1103/PhysRevE.74.016126 [Show bibtex]
    
    

    @article{Peixoto_2006,
        title={Network of epicenters of the Olami-Feder-Christensen model of earthquakes},
        volume={74},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.74.016126},
        DOI={10.1103/physreve.74.016126},
        number={1},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Prado, Carmen P. C.},
        year={2006},
        month=jul
    }

53. Statistics of epicenters in the Olami-Feder-Christensen model in two and three dimensions¶
    Tiago P. Peixoto, Carmen P. C. Prado
    Physica A 342 1-2 171–177 (2004)
    DOI: 10.1016/j.physa.2004.04.075 [Show bibtex]
    
    

    @article{Peixoto_2004,
        title={Statistics of epicenters in the Olami–Feder–Christensen model in two and three dimensions},
        volume={342},
        ISSN={0378-4371},
        url={http://dx.doi.org/10.1016/j.physa.2004.04.075},
        DOI={10.1016/j.physa.2004.04.075},
        number={1–2},
        journal={Physica A: Statistical Mechanics and its Applications},
        publisher={Elsevier BV},
        author={Peixoto, Tiago P. and Prado, Carmen P.C.},
        year={2004},
        month=oct,
        pages={171–177}
    }

54. Distribution of epicenters in the Olami-Feder-Christensen model¶
    Tiago P. Peixoto, Carmen P. C. Prado
    Phys. Rev. E 69 2 025101 (2004)
    DOI: 10.1103/PhysRevE.69.025101 [Show bibtex]
    
    

    @article{Peixoto_2004,
        title={Distribution of epicenters in the Olami-Feder-Christensen model},
        volume={69},
        ISSN={1550-2376},
        url={http://dx.doi.org/10.1103/PhysRevE.69.025101},
        DOI={10.1103/physreve.69.025101},
        number={2},
        journal={Physical Review E},
        publisher={American Physical Society (APS)},
        author={Peixoto, Tiago P. and Prado, Carmen P. C.},
        year={2004},
        month=feb
    }